Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05600 425 / 5e-150 alpha/beta-Hydrolases superfamily protein (.1) AT4G02340 406 / 1e-142 alpha/beta-Hydrolases superfamily protein (.1) AT4G15960 388 / 7e-135 alpha/beta-Hydrolases superfamily protein (.1) AT2G26740 357 / 1e-123 ATSEH soluble epoxide hydrolase (.1) AT2G26750 350 / 5e-121 alpha/beta-Hydrolases superfamily protein (.1) AT4G15955 315 / 3e-107 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT3G51000 296 / 2e-99 alpha/beta-Hydrolases superfamily protein (.1) AT4G12830 57 / 5e-09 alpha/beta-Hydrolases superfamily protein (.1) AT4G33180 54 / 3e-08 alpha/beta-Hydrolases superfamily protein (.1) AT1G52510 52 / 1e-07 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020663 [exp] 648 / 0 AT3G05600 416 / 1e-146 alpha/beta-Hydrolases superfamily protein (.1) Lus10038649 [exp] 382 / 4e-133 AT4G15960 420 / 1e-147 alpha/beta-Hydrolases superfamily protein (.1) Lus10026141 [exp] 381 / 4e-133 AT4G02340 446 / 6e-159 alpha/beta-Hydrolases superfamily protein (.1) Lus10010293 [exp] 380 / 2e-132 AT4G02340 476 / 1e-170 alpha/beta-Hydrolases superfamily protein (.1) Lus10008683 [exp] 362 / 1e-125 AT4G02340 428 / 1e-151 alpha/beta-Hydrolases superfamily protein (.1) Lus10004439 [exp] 348 / 4e-120 AT4G02340 384 / 3e-134 alpha/beta-Hydrolases superfamily protein (.1) Lus10037577 [exp] 334 / 3e-114 AT4G02340 384 / 6e-134 alpha/beta-Hydrolases superfamily protein (.1) Lus10006827 [exp] 316 / 2e-107 AT4G02340 380 / 8e-133 alpha/beta-Hydrolases superfamily protein (.1) Lus10008684 [exp] 313 / 1e-106 AT4G02340 369 / 1e-128 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G013500 [exp] 483 / 2e-173 AT3G05600 425 / 2e-150 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010700 [exp] 410 / 1e-144 AT4G15960 404 / 2e-141 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G127200 [exp] 403 / 8e-142 AT4G02340 519 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G202700 [exp] 402 / 4e-141 AT4G02340 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010800 [exp] 380 / 2e-132 AT4G15960 413 / 1e-144 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010900 [exp] 375 / 2e-130 AT4G15960 412 / 3e-144 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G081000 [exp] 358 / 9e-124 AT4G02340 455 / 1e-161 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G018900 [exp] 310 / 3e-105 AT3G51000 454 / 9e-162 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G023400 [exp] 263 / 2e-88 AT3G05600 238 / 8e-79 alpha/beta-Hydrolases superfamily protein (.1) Potri.011G048000 [exp] 174 / 8e-52 AT3G51000 219 / 2e-69 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10029878 pacid=23159717 polypeptide=Lus10029878 locus=Lus10029878.g ID=Lus10029878.BGIv1.0 annot-version=v1.0 ATGGAAGAAATCAGCCACAGAACAGTGAGTGTCAATGGAATCAACATGCACATTGCTGAAAAGGGTCAAGAACAAGGAAAGAAAAAACCAGTAGTCCTAT TGCTCCATGGATTCCCTGAGCTCTGGTACACATGGCGCCACCAAATCCTCCACCTCAGCTCCCTCGGCTTCCACGCCGTGGCTCCTGACCTTAGGGGCTT CGGAGACACCGATGCCCCTGAATCGAGCCGCGAGTACACCTGCCACCACGTCGTAGGCGACATTGTAGCCCTCATCGACCACCACCTCGGCGTGGACCAA GTGTTCTTGGTGGCTCATGACTGGGGAGCCATCATTGGCTGGTACTTGTGCCAGTTCAGGCCTGATAAAGTCAAGGCATTTGCTTGCCTTAGCGTACCCT TCAGGCCTCGGAACCCCAAGATCAAGCCTGTGGATGGGATGAGGCTTGTGTTTGGAGATGATTACTATATGTGCAGGTTTCAGGAGGTTGGAGTTGTGGA AGGTGAGATGAAGAGAGCTGGGACGGATCAGGTGCTGAAGAAGATTCTGAGTAACAGGAATCCTGGCCCTCCGTGTATTCCTAAGAAGGATGCGGATGAG AAGCCGTTTGGGATTTGTGCTAAGAATCCAGCAAAGTTGCCATCTTGGATTAGCCAGGAGGATTTGAACTACAGTGTTGACAAGTTTGATGAGAAGGGGT TCACTGGAGGGCTCAACTACTACAGAGCATTGGATCTGAGCTGGGAGCTGACCGCGGCCTGGACAGGGACGGCGGTGATGGTGCCGACCAAGTACGTGGT GGGAGACGAGGACATGGTGTACACAACACCAGGGATAAAGGAGTATGTCCATGGAGGTGGGTTGAAGAGGGATGTGCCATTGTTGGAGGAGATTGTGGTG ATGGAAGGAGTTGGTCACTTTCTTAACCAGGAGAAGGCTGATGAAGTCAATGCTCACATCTACCACTTCATCAAAAAGTTCATCTAA
AA sequence Show only first row Show all	>Lus10029878 pacid=23159717 polypeptide=Lus10029878 locus=Lus10029878.g ID=Lus10029878.BGIv1.0 annot-version=v1.0 MEEISHRTVSVNGINMHIAEKGQEQGKKKPVVLLLHGFPELWYTWRHQILHLSSLGFHAVAPDLRGFGDTDAPESSREYTCHHVVGDIVALIDHHLGVDQ VFLVAHDWGAIIGWYLCQFRPDKVKAFACLSVPFRPRNPKIKPVDGMRLVFGDDYYMCRFQEVGVVEGEMKRAGTDQVLKKILSNRNPGPPCIPKKDADE KPFGICAKNPAKLPSWISQEDLNYSVDKFDEKGFTGGLNYYRALDLSWELTAAWTGTAVMVPTKYVVGDEDMVYTTPGIKEYVHGGGLKRDVPLLEEIVV MEGVGHFLNQEKADEVNAHIYHFIKKFI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05600			alpha/beta-Hydrolases superfam...		Lus10029878 [exp]	0	1
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10014528 [exp]	1.4	0.9957
					Lus10026293 [exp]	1.4	0.9966
AT5G63090	AS2	LOBB, LOB	Lateral organ boundaries (LOB)...		Lus10011906 [exp]	2.0	0.9945
AT5G14070		ROXY2	Thioredoxin superfamily protei...		Lus10011333 [exp]	3.3	0.9902
AT1G65870			Disease resistance-responsive ...		Lus10016231 [exp]	3.9	0.9942
					Lus10015654 [exp]	4.0	0.9911
AT1G71691			GDSL-like Lipase/Acylhydrolase...		Lus10009457 [exp]	4.1	0.9872
AT5G53950	NAC	ATCUC2, CUC2, A...	CUP-SHAPED COTYLEDON 2, Arabid...		Lus10005537 [exp]	4.6	0.9951
AT2G02540	ZF_HD	ATHB21, ZFHD4, ...	ZINC FINGER HOMEODOMAIN 3, ZIN...		Lus10010693 [exp]	5.3	0.9912
AT1G72570	AP2_ERF		Integrase-type DNA-binding sup...		Lus10015653 [exp]	5.5	0.9887

Compare expression of checked genes

Lus10029878 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.