Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05590 307 / 2e-108 RPL18 ribosomal protein L18 (.1) AT5G27850 306 / 6e-108 Ribosomal protein L18e/L15 superfamily protein (.1) AT2G47570 220 / 1e-74 Ribosomal protein L18e/L15 superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041264 [exp] 345 / 5e-123 AT5G27850 330 / 4e-117 Ribosomal protein L18e/L15 superfamily protein (.1) Lus10015198 [exp] 338 / 2e-120 AT3G05590 333 / 2e-118 ribosomal protein L18 (.1) Lus10031485 [exp] 340 / 1e-118 AT3G05590 333 / 9e-116 ribosomal protein L18 (.1) Lus10020659 [exp] 342 / 3e-117 AT3G05580 562 / 0.0 type one protein phosphatase 9, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Lus10021971 [exp] 340 / 5e-115 AT5G42390 629 / 0.0 stromal processing peptidase, Insulinase (Peptidase family M16) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G202800 [exp] 330 / 3e-117 AT3G05590 340 / 3e-121 ribosomal protein L18 (.1) Potri.014G127300 [exp] 330 / 5e-117 AT3G05590 334 / 8e-119 ribosomal protein L18 (.1) Potri.013G013600 [exp] 326 / 1e-115 AT3G05590 337 / 8e-120 ribosomal protein L18 (.1) Potri.005G023500 [exp] 323 / 2e-114 AT3G05590 320 / 2e-113 ribosomal protein L18 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0588 [flax] [poplar] Ribos_L15p_L18e PF00828 [flax] [poplar] Ribosomal_L27A Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
Representative CDS sequence Show only first row Show all	>Lus10029879 pacid=23159858 polypeptide=Lus10029879 locus=Lus10029879.g ID=Lus10029879.BGIv1.0 annot-version=v1.0 ATGGGGATCGATTTGAAGGCAGGAGGTAAGAGAAAGAAGACCAAGCGCACGGCGCCAAAGTCGAATGATATCTACCTCAAGCTTCTCGTTAAGCTGTACC GATTCCTGGTTAGGAGAACTGGTAGTAGCTTCAATGCTGTGATATTGAAAAGGCTGTTTATGAGCAAGGTTAACAAGCCTCCGCTTTCCCTCTCCAGACT CATTCGATTCACTAAAGGAAAGGAGGGAAAGATTGCTGTGGTTGTGGGAACAATCACTGATGACATTAGGGTTTATGACGTTCCAGCTATGAAGGTTACT GCATTGAGGTTCACTGAAACTGCCAGGGCTAGAATTGAAAAGGCTGGTGGTGAATGCTTGACTTTTGATCAGCTTGCTCTGAGAGCTCCTCTTGGCCAGA ACACGGTTCTACTCCGAGGTCCCAAGAATGCTCGTGAGGCAGTGAAGCACTTTGGCCCAGCTCCAGGTGTGCCACACAGCCACACCAAGCCTTACGTCAG GTCGAAGGGAAGGAAGTTCGAAAAGGCTAGGGGGAGGAGGAACAGCAGAGGATTCAGGGTTTAA
AA sequence Show only first row Show all	>Lus10029879 pacid=23159858 polypeptide=Lus10029879 locus=Lus10029879.g ID=Lus10029879.BGIv1.0 annot-version=v1.0 MGIDLKAGGKRKKTKRTAPKSNDIYLKLLVKLYRFLVRRTGSSFNAVILKRLFMSKVNKPPLSLSRLIRFTKGKEGKIAVVVGTITDDIRVYDVPAMKVT ALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGFRV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27850			Ribosomal protein L18e/L15 sup...		Lus10029879 [exp]	0	1
AT5G02960			Ribosomal protein S12/S23 fami...		Lus10026479 [exp]	2.4	0.8898
AT2G27530		PGY1	PIGGYBACK1, Ribosomal protein ...		Lus10004871 [exp]	2.4	0.8858
AT2G42740		RPL16A	ribosomal protein large subuni...		Lus10029824 [exp]	4.6	0.8925
AT5G48760			Ribosomal protein L13 family p...		Lus10022793 [exp]	6.7	0.8761
AT1G09970		RLK7, LRRXI-23 ...	receptor-like kinase 7, Leucin...		Lus10020500 [exp]	7.7	0.8627
AT1G09640			Translation elongation factor ...		Lus10007150 [exp]	8.0	0.7686
AT5G48760			Ribosomal protein L13 family p...		Lus10011857 [exp]	9.4	0.8796
AT3G49010		RSU2, ATBBC1	40S RIBOSOMAL PROTEIN, breast ...		Lus10009578 [exp]	9.5	0.8757
AT1G09690			Translation protein SH3-like f...		Lus10030882 [exp]	10.6	0.8711
AT3G25230		ROF1, ATFKBP62	FK506 BINDING PROTEIN 62, rota...		Lus10002338 [exp]	11.2	0.8757

Compare expression of checked genes

Lus10029879 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.