Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71160 337 / 1e-111 KCS7 3-ketoacyl-CoA synthase 7 (.1) AT1G25450 329 / 3e-108 KCS5, CER60 ECERIFERUM 60, 3-ketoacyl-CoA synthase 5 (.1) AT1G19440 328 / 1e-107 KCS4 3-ketoacyl-CoA synthase 4 (.1) AT1G68530 327 / 3e-107 KCS6, CER6, POP1, G2, CUT1 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2) AT2G16280 317 / 2e-103 KCS9 3-ketoacyl-CoA synthase 9 (.1) AT4G34510 310 / 5e-101 KCS17, KCS2 3-ketoacyl-CoA synthase 17 (.1) AT1G01120 295 / 2e-94 KCS1 3-ketoacyl-CoA synthase 1 (.1) AT2G15090 293 / 3e-94 KCS8 3-ketoacyl-CoA synthase 8 (.1) AT4G34250 291 / 2e-93 KCS16 3-ketoacyl-CoA synthase 16 (.1) AT5G49070 288 / 1e-92 KCS21 3-ketoacyl-CoA synthase 21 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020662 [exp] 614 / 0 AT1G71160 470 / 6e-164 3-ketoacyl-CoA synthase 7 (.1) Lus10031486 [exp] 458 / 9e-160 AT1G71160 450 / 1e-156 3-ketoacyl-CoA synthase 7 (.1) Lus10034319 [exp] 342 / 2e-113 AT1G68530 895 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2) Lus10041452 [exp] 340 / 2e-112 AT1G25450 890 / 0.0 ECERIFERUM 60, 3-ketoacyl-CoA synthase 5 (.1) Lus10002533 [exp] 330 / 1e-108 AT1G19440 890 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10001657 [exp] 327 / 2e-107 AT1G19440 892 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10026345 [exp] 323 / 1e-105 AT1G19440 889 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10042318 [exp] 323 / 1e-105 AT1G19440 890 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10002691 [exp] 295 / 9e-95 AT1G01120 845 / 0.0 3-ketoacyl-CoA synthase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G015100 [exp] 431 / 2e-148 AT1G71160 486 / 6e-170 3-ketoacyl-CoA synthase 7 (.1) Potri.001G211400 [exp] 351 / 2e-117 AT1G71160 563 / 0.0 3-ketoacyl-CoA synthase 7 (.1) Potri.008G120300 [exp] 337 / 2e-111 AT1G68530 895 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2) Potri.010G125300 [exp] 337 / 3e-111 AT1G68530 915 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2) Potri.014G196200 [exp] 330 / 2e-108 AT1G19440 854 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Potri.004G155600 [exp] 325 / 2e-106 AT1G19440 899 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Potri.009G116700 [exp] 323 / 1e-105 AT1G19440 899 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Potri.002G178000 [exp] 292 / 2e-93 AT1G01120 826 / 0.0 3-ketoacyl-CoA synthase 1 (.1) Potri.018G032200 [exp] 290 / 5e-93 AT2G26640 867 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.006G249200 [exp] 286 / 1e-91 AT2G26640 886 / 0.0 3-ketoacyl-CoA synthase 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [flax] [poplar] Thiolase PF02797 [flax] [poplar] Chal_sti_synt_C Chalcone and stilbene synthases, C-terminal domain CL0046 [flax] [poplar] Thiolase PF08392 [flax] [poplar] FAE1_CUT1_RppA FAE1/Type III polyketide synthase-like protein
Representative CDS sequence Show only first row Show all	>Lus10029880 pacid=23159812 polypeptide=Lus10029880 locus=Lus10029880.g ID=Lus10029880.BGIv1.0 annot-version=v1.0 ATGATAAACGTGGATGAGGAACTGCAAAGTTCGAACTGCATGATTCCTTTAAACAATCCGTTTGTTACGCCTAATCAAAGGCAAACCCACATTCCTCCAT CCTCCCTAATTACACCTTTCTTCCCCCAATATAAAACAAATGAGCCAAACAGTACTGCAACTTCATCCAAACCAAACCAGAGATACAATTATGATAGCAA CAGAGGCGTCAGTTCCAATGTTCGAGCGGCTCGCGGCCGTTGTCGACGAATTTTCATCCCTCCTCACCCCGAAAGCCATAGCATTGCTAGCTCTATTCAC CGTCGCATTATACTACACGTCGCATTATACTACACGTCCTCCACTCTGAAGCGAGTCTACCTCGTGGATTTCATGTGCTTCAAGGGTCCGAAAACCCACC GCGTCCCAATTTCGAGGTTCGTGGAACACGCGGAGATAGGAAAGTCGACGAGGGACATGATTGAGTTCCAGACCAAAGTCATCGGGCGGTCAGGGATTGG CGAGCGGAGCTACCTTCCCACGGGGATGCACTTCCTCCCGCCCAGTTCTTCGTTGAAGTACGGGGTCGAGGAGCTCGAGATGGTGCTTTTCTCCACCGTT CAGAATCTTTTAACCAAGCTTGATATCGATCCGAAAGCTATAGAAGCTTTGATCACGAATCGTACTCTAGTCTCGTTGACGCCTTCTTTAGCTGCGATGG TGATCAACAAGTTCGGGTTCAGGAGCGACGTGAAGAGCTACAACATATCCGGGATGGGGCGCAGCGCCGGACTTCTGTCGCTGTCGTTGGATCGAGACAT GTTCCGAGTTCATGAGAACACATTGGTTCTCGCTGTGAGCGTGGAGGCTATGTGTCAGAGCATCTACGAAGGGAAAGTGAAGTCGATGCTGCTGGAGAAC TGTCTCTTCCGGATGGGAGGTTCCGCGGTCCTTTTCTCGAATCGTGACATCGACAGGAAGACTGCGAAATACGAGCTCCAACACATAGTGAATACGAATC TCGGGTCGAAAGACGTGTTGTATAAGTGTGTGTTTCAGGAGACTGACAGTGAAGGCTACACCGGTGTAGCCTTATCGAAGTCGATCCTGCAAGTCGCGAG CGAGGGTCTGAAGACCAATCTCGTAACTCTAGCTGCGAGTGCTCCACCTTACTCCGAGATAATCAAGTGGGGATTCTCGGTACTGTGGGTGAAAGAAGCA GATCGGTATCAGCCGTACTTCAAGAAGGCGTTCGACCATTTCTGCATTCATGCGGGCGGGAAAGCTGTAATTGATGTTATCAAAAAGAGCCTAAAGTTGA GAGATGAGGATGTCGAAGCGTCGAAGATGACGCTTCATAGATTTGGCAACACTTCCTCGTAG
AA sequence Show only first row Show all	>Lus10029880 pacid=23159812 polypeptide=Lus10029880 locus=Lus10029880.g ID=Lus10029880.BGIv1.0 annot-version=v1.0 MINVDEELQSSNCMIPLNNPFVTPNQRQTHIPPSSLITPFFPQYKTNEPNSTATSSKPNQRYNYDSNRGVSSNVRAARGRCRRIFIPPHPESHSIASSIH RRIILHVALYYTSSTLKRVYLVDFMCFKGPKTHRVPISRFVEHAEIGKSTRDMIEFQTKVIGRSGIGERSYLPTGMHFLPPSSSLKYGVEELEMVLFSTV QNLLTKLDIDPKAIEALITNRTLVSLTPSLAAMVINKFGFRSDVKSYNISGMGRSAGLLSLSLDRDMFRVHENTLVLAVSVEAMCQSIYEGKVKSMLLEN CLFRMGGSAVLFSNRDIDRKTAKYELQHIVNTNLGSKDVLYKCVFQETDSEGYTGVALSKSILQVASEGLKTNLVTLAASAPPYSEIIKWGFSVLWVKEA DRYQPYFKKAFDHFCIHAGGKAVIDVIKKSLKLRDEDVEASKMTLHRFGNTSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71160		KCS7	3-ketoacyl-CoA synthase 7 (.1)		Lus10029880 [exp]	0	1
AT4G19985			Acyl-CoA N-acyltransferases (N...		Lus10003689 [exp]	4.6	0.7229
AT3G09660		MCM8	minichromosome maintenance 8 (...		Lus10015060 [exp]	5.2	0.7566
AT4G28560		RIC7	ROP-interactive CRIB motif-con...		Lus10003624 [exp]	6.6	0.7495
AT1G13230			Leucine-rich repeat (LRR) fami...		Lus10034261 [exp]	16.2	0.7485
AT3G02150	TCP	TFPD, PTF1, TCP...	TEOSINTE BRANCHED1, CYCLOIDEA ...		Lus10032984 [exp]	17.7	0.7363
AT4G35190		LOG5	LONELY GUY 5, Putative lysine ...		Lus10022638 [exp]	29.3	0.7261
AT3G61700			Plant protein 1589 of unknown ...		Lus10039340 [exp]	31.9	0.6822
AT3G24050	GATA	GATA1	GATA transcription factor 1 (....		Lus10031464 [exp]	37.2	0.6806
AT1G13230			Leucine-rich repeat (LRR) fami...		Lus10034384 [exp]	37.3	0.6961
AT2G02148			unknown protein		Lus10031926 [exp]	37.5	0.6477

Compare expression of checked genes

Lus10029880 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.