Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27830 245 / 1e-79 unknown protein AT1G56220 117 / 2e-32 Dormancy/auxin associated family protein (.1.2.3.4) AT1G54070 59 / 9e-11 Dormancy/auxin associated family protein (.1) AT1G28330 47 / 1e-06 DYL1, DRM1 DORMANCY-ASSOCIATED PROTEIN 1, dormancy-associated protein-like 1 (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020660 [exp] 538 / 0 AT5G27830 256 / 7e-85 unknown protein Lus10020661 [exp] 174 / 5e-54 AT1G56220 126 / 2e-38 Dormancy/auxin associated family protein (.1.2.3.4) Lus10031488 [exp] 138 / 8e-40 AT1G56220 136 / 3e-42 Dormancy/auxin associated family protein (.1.2.3.4) Lus10015193 [exp] 134 / 4e-38 AT1G56220 134 / 3e-41 Dormancy/auxin associated family protein (.1.2.3.4) Lus10013180 [exp] 60 / 2e-10 AT1G54070 78 / 5e-19 Dormancy/auxin associated family protein (.1) Lus10008142 [exp] 53 / 1e-08 AT1G54070 65 / 1e-14 Dormancy/auxin associated family protein (.1) Lus10025446 [exp] 46 / 2e-06 AT2G33830 82 / 4e-22 Dormancy/auxin associated family protein (.1.2) Lus10029882 [exp] 46 / 2e-05 AT3G05580 555 / 0.0 type one protein phosphatase 9, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Lus10013997 [exp] 42 / 4e-05 AT1G28330 119 / 4e-36 DORMANCY-ASSOCIATED PROTEIN 1, dormancy-associated protein-like 1 (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G024200 [exp] 387 / 6e-135 AT5G27830 277 / 6e-93 unknown protein Potri.013G014800 [exp] 347 / 2e-119 AT5G27830 235 / 1e-76 unknown protein Potri.013G014900 [exp] 124 / 1e-34 AT1G56220 97 / 7e-27 Dormancy/auxin associated family protein (.1.2.3.4) Potri.005G024250 [exp] 118 / 7e-33 AT1G56220 86 / 2e-23 Dormancy/auxin associated family protein (.1.2.3.4) Potri.001G164800 [exp] 59 / 8e-11 AT1G54070 67 / 3e-15 Dormancy/auxin associated family protein (.1) Potri.003G070500 [exp] 59 / 1e-10 AT1G54070 90 / 6e-24 Dormancy/auxin associated family protein (.1) Potri.004G047100 [exp] 47 / 2e-06 AT1G28330 122 / 7e-37 DORMANCY-ASSOCIATED PROTEIN 1, dormancy-associated protein-like 1 (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05564 [flax] [poplar] Auxin_repressed Dormancy/auxin associated protein CL0644 [flax] [poplar] Fz PF03024 [flax] [poplar] Folate_rec Folate receptor family
Representative CDS sequence Show only first row Show all	>Lus10029881 pacid=23159753 polypeptide=Lus10029881 locus=Lus10029881.g ID=Lus10029881.BGIv1.0 annot-version=v1.0 ATGGGACTGCTCGACCAGCTTTGGGACGACACAGTCGCCGGTCCGACCCCGGACAACGGCCTCGGCAAGCTCCGGAAGTACAAAACTTTCAGCTTCCAAT CAAACTCCGGCAAGAATTCCGATGGCGGGAACGTGAAATCGTACGGTCATGAAGAGTCAGAGGAAGCAGCGACGAGAGTGACGCGAAGTATCATGATCGT TAAGCCGCCTGGGTACCAGAGCGGATCTACGCCTCCGGTTTCCCCCGCAGGATCTACTCCTCCGGTGTCCCAATTTCCCGGCAAATCCGAGGGAGTCTGT GTGTCGAAAGGTGGCCGATTCCCACCGTACGCGTCTGAAGGCCAGCCTCCTAAAAAAGTAGGCAAGGGTTCAAAAGATTTGACCCTCTGCAGGATTTTTC GCAAAAGGACATGCTGTGATGCAGCTCAGACGCATCCTGCTTTGCTGTCCCTCAGGCGGCTGGCCTCCATTGGGGAAGCCAAAGAGTCATGCTTACAGTT CTGGGAGGCATTGGAATGTTCGATTTGCGATCCAAAAGTCGGCATCCAGCCTGGACCTCCTGTTATATGCGCTTCGCTTTGTGACAGAGCCTATCAAGCT TGTGGTGCTGCTTACTTCTCCATGGATTCGAAAACTCGGTATCTAGCACCATGTGGAGTGAACGATTTCCTTTGCGGTAGAGCTGCAGAATGGGTATTGA ATGGAACAGATTTCTGCACTGCTTTGGGATTCAGTGTTGGAGTTTCCGAGCACTCATTCCATGGTGCCAATCAAGCTGCATGCTATGGTGGCAAGAGCAG TGTTGATTACATCTCTGATTCGTGGACGCAACCACAGAGGAATCGAAATGCGGCCAGTTTGGGGTGGTTAGAAGGCTTCCAGCAGTGGGCGCTGGAGATG TCGTTTAGTGAAATGGTATCGTGGGCTGTAGGAGGGATGGTGCTTACTGCAGGACTCTTATTTGTAAGCAAAAGGAAGAGTTATAACCGGCACCAGAAGC TCGCTGCTATCCAGAGAGCAGCAAGGAGACTGGATGGCAAGACAGTCCAGTTTGATGCGCAAGGAAAAAGAAAAGTGAATCAAAGATGA
AA sequence Show only first row Show all	>Lus10029881 pacid=23159753 polypeptide=Lus10029881 locus=Lus10029881.g ID=Lus10029881.BGIv1.0 annot-version=v1.0 MGLLDQLWDDTVAGPTPDNGLGKLRKYKTFSFQSNSGKNSDGGNVKSYGHEESEEAATRVTRSIMIVKPPGYQSGSTPPVSPAGSTPPVSQFPGKSEGVC VSKGGRFPPYASEGQPPKKVGKGSKDLTLCRIFRKRTCCDAAQTHPALLSLRRLASIGEAKESCLQFWEALECSICDPKVGIQPGPPVICASLCDRAYQA CGAAYFSMDSKTRYLAPCGVNDFLCGRAAEWVLNGTDFCTALGFSVGVSEHSFHGANQAACYGGKSSVDYISDSWTQPQRNRNAASLGWLEGFQQWALEM SFSEMVSWAVGGMVLTAGLLFVSKRKSYNRHQKLAAIQRAARRLDGKTVQFDAQGKRKVNQR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27830			unknown protein		Lus10029881 [exp]	0	1
AT1G55510		BCDH BETA1, BCD...	branched-chain alpha-keto acid...		Lus10013401 [exp]	1.4	0.9650
AT5G10600		CYP81K2	"cytochrome P450, family 81, s...		Lus10009909 [exp]	2.0	0.9570
AT3G13750		BGAL1	beta-galactosidase 1, beta gal...		Lus10015625 [exp]	2.2	0.9559
AT4G35770		ATSEN1, DIN1, S...	SENESCENCE ASSOCIATED GENE 1, ...		Lus10041843 [exp]	2.4	0.9585
AT1G10070		ATBCAT-2	branched-chain amino acid tran...		Lus10028246 [exp]	2.4	0.9558
AT1G10600		AMSH2	associated molecule with the S...		Lus10030875 [exp]	2.4	0.9570
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Lus10038265 [exp]	3.3	0.9475
AT5G60230		ATSEN2, SEN2	splicing endonuclease 2 (.1.2)		Lus10019074 [exp]	4.6	0.9511
AT4G28240			Wound-responsive family protei...		Lus10031617 [exp]	5.7	0.9208
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Lus10000076 [exp]	7.1	0.9478

Compare expression of checked genes

Lus10029881 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.