Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05580 557 / 0 TOPP9 type one protein phosphatase 9, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) AT5G27840 554 / 0 TOPP8 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2) AT2G39840 491 / 3e-176 TOPP4 type one serine/threonine protein phosphatase 4 (.1) AT2G29400 479 / 7e-172 PP1-AT, TOPP1 type one protein phosphatase 1 (.1) AT5G59160 479 / 7e-172 PPO, TOPP2 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) AT3G46820 477 / 5e-171 TOPP5 type one serine/threonine protein phosphatase 5 (.1) AT1G64040 469 / 2e-167 TOPP3 type one serine/threonine protein phosphatase 3 (.1) AT4G11240 460 / 4e-164 TOPP7 Calcineurin-like metallo-phosphoesterase superfamily protein (.1) AT5G43380 451 / 2e-160 TOPP6 type one serine/threonine protein phosphatase 6 (.1.2.3) AT5G55260 294 / 7e-99 EP128, PPX-2, PPX2 PROTEIN PHOSPHATASE X -2, protein phosphatase X 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020659 [exp] 630 / 0 AT3G05580 562 / 0.0 type one protein phosphatase 9, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Lus10031489 [exp] 580 / 0 AT3G05580 565 / 0.0 type one protein phosphatase 9, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Lus10042559 [exp] 493 / 1e-176 AT2G39840 564 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10022019 [exp] 493 / 1e-175 AT2G39840 565 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10004989 [exp] 485 / 4e-174 AT5G59160 565 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Lus10004692 [exp] 483 / 5e-173 AT2G39840 596 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10016489 [exp] 482 / 1e-172 AT5G59160 570 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Lus10001025 [exp] 482 / 1e-172 AT2G39840 602 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10030163 [exp] 481 / 2e-172 AT2G39840 602 / 0.0 type one serine/threonine protein phosphatase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G024100 [exp] 557 / 0 AT5G27840 553 / 0.0 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2) Potri.013G014700 [exp] 552 / 0 AT3G05580 563 / 0.0 type one protein phosphatase 9, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Potri.013G045900 [exp] 496 / 6e-178 AT2G39840 564 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.019G018000 [exp] 489 / 2e-175 AT2G39840 554 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.001G245700 [exp] 484 / 2e-173 AT2G29400 556 / 0.0 type one protein phosphatase 1 (.1) Potri.008G060800 [exp] 483 / 4e-173 AT2G39840 594 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.009G037700 [exp] 482 / 5e-173 AT5G59160 553 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Potri.010G197600 [exp] 482 / 8e-173 AT2G39840 602 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.008G166300 [exp] 479 / 3e-171 AT2G39840 545 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.001G098600 [exp] 471 / 1e-168 AT4G11240 582 / 0.0 Calcineurin-like metallo-phosphoesterase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10029882 pacid=23159830 polypeptide=Lus10029882 locus=Lus10029882.g ID=Lus10029882.BGIv1.0 annot-version=v1.0 ATGGATACTGGCGTGTTGGACGACATCATAAGGAGGCTTTTGGAAGGGAAAGGCGGGAAGCAGGTTCAGCTATCTGAGTCGGAGATCCGTCAATTGTGTG TTAATGCTCGCCAGATTTTCCTCTCCCAGCCTACTCTCCTCGAGATCAAAGCTCCAATTCGCATCTGCGGTGACATACACGGACAGTATCAAGACCTATT GAAACTTTTCGAATACGGCGGTTACCCTCCAAGTGCAAACTATCTTTTCCTCGGAGACTATGTTGATAGAGGGAAGCAAAGCTTGGAGACCATATGCTTA CTTTTAGCCTACAAAATAAGATACCCGGATAAGGTTCACCTATTGAGAGGGAACCACGAGGATGCAAAGATCAACCGGATATATGGATTCTACGACGAAT GCAAGAGGAGATTCAACGTCAGGCTGTGGAAAATATTCACGGATTGTTTTAATTCATTGCCAGTGGCTGCACTGATCGACGAGAAAATACTTTGTATGCA CGGAGGACTGTCTCCTGATATGGATCATTTGGATCAGATACGACACATTGAAAGGCCTACTGAGGTTCCGGACAGTGGCCTTCTTTGCGATCTTCTTTGG TCCGATCCACATCCGACGAACGAAGGATGGGGGGTTAGTGATCGAGGTGTTTCGAGTACCTTTGGAGCTGATGTAGTCGCTGAGTTTCTCGACAAAAATG ATCTCGATCTCATCTGCAGAGGGCATCAGGTGGTGGAAGATGGGTATGTGTTCTTCGCCCAGAGGCGGCTAGTCACGATCTTCTCGGCTCCTAACTACGG CGGGGAGTTCGACAACGCAGGTGCTCTATTGAGTGTCGACGAATCTCTGGTGTGTTCCTTCGAGATATTGAAACCAGCTACTTCAGCTAGCAGTTCAAGG ATGCCCCTTAAGAAGTCTCCTTGCTGCTCTCTGGATAGCAGCGAGCTTCTGGTGCCGGTTATAACTCTTCCTTTTGCTACAATAATGGCCAAGTAG
AA sequence Show only first row Show all	>Lus10029882 pacid=23159830 polypeptide=Lus10029882 locus=Lus10029882.g ID=Lus10029882.BGIv1.0 annot-version=v1.0 MDTGVLDDIIRRLLEGKGGKQVQLSESEIRQLCVNARQIFLSQPTLLEIKAPIRICGDIHGQYQDLLKLFEYGGYPPSANYLFLGDYVDRGKQSLETICL LLAYKIRYPDKVHLLRGNHEDAKINRIYGFYDECKRRFNVRLWKIFTDCFNSLPVAALIDEKILCMHGGLSPDMDHLDQIRHIERPTEVPDSGLLCDLLW SDPHPTNEGWGVSDRGVSSTFGADVVAEFLDKNDLDLICRGHQVVEDGYVFFAQRRLVTIFSAPNYGGEFDNAGALLSVDESLVCSFEILKPATSASSSR MPLKKSPCCSLDSSELLVPVITLPFATIMAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05580		TOPP9	type one protein phosphatase 9...		Lus10029882 [exp]	0	1
AT2G32260		ATCCT1	phosphorylcholine cytidylyltra...		Lus10027337 [exp]	3.2	0.9011
AT4G17230	GRAS	SCL13	SCARECROW-like 13 (.1)		Lus10000539 [exp]	4.9	0.9037
AT1G77480			Eukaryotic aspartyl protease f...		Lus10018146 [exp]	7.7	0.8681
AT1G64610			Transducin/WD40 repeat-like su...		Lus10017312 [exp]	8.5	0.8480
AT1G01550		BPS1	BYPASS 1, Protein of unknown f...		Lus10039581 [exp]	8.9	0.8667
AT1G09070		(AT)SRC2, (AT)S...	soybean gene regulated by cold...		Lus10029901 [exp]	11.1	0.8711
AT2G46080			unknown protein		Lus10007920 [exp]	11.3	0.8279
AT2G41835	C2H2ZnF		zinc finger (C2H2 type, AN1-li...		Lus10012196 [exp]	12.3	0.8506
					Lus10016654 [exp]	12.7	0.8136
					Lus10022031 [exp]	12.7	0.8585

Compare expression of checked genes

Lus10029882 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.