Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05550 91 / 2e-23 Hypoxia-responsive family protein (.1) AT5G27760 83 / 1e-20 Hypoxia-responsive family protein (.1) AT1G28590 61 / 2e-10 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G45910 59 / 3e-10 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G01130 56 / 4e-09 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G31550 56 / 4e-09 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G28570 56 / 5e-09 SGNH hydrolase-type esterase superfamily protein (.1.2) AT2G27360 56 / 5e-09 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G28640 55 / 8e-09 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G28660 55 / 1e-08 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020658 [exp] 129 / 2e-38 AT3G05550 94 / 6e-27 Hypoxia-responsive family protein (.1) Lus10015191 [exp] 95 / 3e-25 AT3G05550 87 / 3e-24 Hypoxia-responsive family protein (.1) Lus10031490 [exp] 61 / 1e-12 AT3G05550 54 / 2e-11 Hypoxia-responsive family protein (.1) Lus10033002 [exp] 57 / 7e-11 AT3G05550 50 / 2e-09 Hypoxia-responsive family protein (.1) Lus10013938 [exp] 58 / 1e-09 AT1G28590 367 / 2e-125 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10008784 [exp] 57 / 2e-09 AT3G27950 391 / 2e-135 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10022233 [exp] 57 / 3e-09 AT3G27950 280 / 4e-92 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10023008 [exp] 56 / 5e-09 AT2G27360 115 / 4e-30 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10006224 [exp] 52 / 2e-07 AT3G26430 342 / 5e-111 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G024300 [exp] 94 / 2e-22 AT5G03980 275 / 1e-90 SGNH hydrolase-type esterase superfamily protein (.1) Potri.013G015400 [exp] 85 / 2e-21 AT3G05550 102 / 5e-30 Hypoxia-responsive family protein (.1) Potri.005G024500 [exp] 84 / 7e-21 AT5G27760 102 / 4e-30 Hypoxia-responsive family protein (.1) Potri.005G025000 [exp] 80 / 3e-17 AT5G03980 270 / 1e-88 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G024966 [exp] 80 / 3e-17 AT5G03980 270 / 1e-88 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G024900 [exp] 80 / 3e-17 AT5G03980 273 / 1e-89 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G024933 [exp] 80 / 3e-17 AT5G03980 255 / 1e-82 SGNH hydrolase-type esterase superfamily protein (.1) Potri.019G056000 [exp] 61 / 2e-12 AT3G05550 58 / 1e-12 Hypoxia-responsive family protein (.1) Potri.004G225100 [exp] 65 / 4e-12 AT1G28640 177 / 8e-52 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G015200 [exp] 64 / 1e-11 AT1G28590 213 / 3e-65 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04588 [flax] [poplar] HIG_1_N Hypoxia induced protein conserved region
Representative CDS sequence Show only first row Show all	>Lus10029883 pacid=23159833 polypeptide=Lus10029883 locus=Lus10029883.g ID=Lus10029883.BGIv1.0 annot-version=v1.0 ATGGCTGAAGGAAACAATACGTTCGAATCCATCAGGGAATGGGTCGCCGACCACAAGATGCGAACCGTGGGTGGCTTGTGGGCTAGCGCGATTGCTGGTT CAATTGCGTACAACTGGTCTCAACCCAACATGAAGACGAGTGTCAAGCTTATTCATGCCAGGATTCACGCTCAGGCTTTCACATTGGCCGCCCTAGCAGG CGCTGCAGCTGTCGAATACTATGAACTTCAATCTATGGATTCCTTCAAAATATTGCACTCCAGATGCTTCCGACCTCTGGAGTATATCCTTATATCACCA GTCCTTTACAGTCCCCTTCCCACGACCGGGTTACTCGTTGTTCCAAATCACTCTCTTTCGAAATGCCGGTTCGATACAATCTATCAACTCGGAGATTCAT CATCGGACACCGGGAATCTGATCCAACAGAATCCCGAATCGCGGTTCGCACGCCTTCCATATGGAGAAACCTTCTTCTCCAAGAAACCAACCGGTCGTTG CTCGGATGGGTTGTTGATCATTGACTACTTGCGATCTCAGCTGGCATTCCTCTCCTTGACCGTACCTGAACCCGACCGCCGATCTGGTTTGTGGCCGTGG GGTCAATTTTGCGGTTGCTGGTTCGACCGCTCTGCCTATGAACGTTCTTTCGCAGAAGGGAATTTCTCCAATGCTAACCAACACTTCTCTGAGTGA
AA sequence Show only first row Show all	>Lus10029883 pacid=23159833 polypeptide=Lus10029883 locus=Lus10029883.g ID=Lus10029883.BGIv1.0 annot-version=v1.0 MAEGNNTFESIREWVADHKMRTVGGLWASAIAGSIAYNWSQPNMKTSVKLIHARIHAQAFTLAALAGAAAVEYYELQSMDSFKILHSRCFRPLEYILISP VLYSPLPTTGLLVVPNHSLSKCRFDTIYQLGDSSSDTGNLIQQNPESRFARLPYGETFFSKKPTGRCSDGLLIIDYLRSQLAFLSLTVPEPDRRSGLWPW GQFCGCWFDRSAYERSFAEGNFSNANQHFSE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05550			Hypoxia-responsive family prot...		Lus10029883 [exp]	0	1
AT5G59350			unknown protein		Lus10004955 [exp]	1.7	0.9832
AT1G32160			Protein of unknown function (D...		Lus10035392 [exp]	2.0	0.9869
AT1G28480		roxy19, GRX480	Thioredoxin superfamily protei...		Lus10039867 [exp]	2.8	0.9861
AT4G10950			SGNH hydrolase-type esterase s...		Lus10032399 [exp]	2.8	0.9823
AT3G05550			Hypoxia-responsive family prot...		Lus10020658 [exp]	3.5	0.9771
AT1G76600			unknown protein		Lus10033761 [exp]	4.9	0.9805
AT2G19860		ATHXK2	ARABIDOPSIS THALIANA HEXOKINAS...		Lus10012946 [exp]	5.5	0.9775
AT2G18670			RING/U-box superfamily protein...		Lus10015506 [exp]	7.3	0.9780
AT1G72360	AP2_ERF	AtERF73, HRE1	HYPOXIA RESPONSIVE ERF \(ETHYL...		Lus10003601 [exp]	7.4	0.9811
AT2G37040		PAL1, ATPAL1	PHE ammonia lyase 1 (.1)		Lus10026518 [exp]	8.0	0.9661

Compare expression of checked genes

Lus10029883 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.