Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77170 543 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G59720 296 / 8e-94 CRR28 CHLORORESPIRATORY REDUCTION28, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21065 295 / 1e-93 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G56310 272 / 1e-85 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G36730 270 / 4e-85 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G02980 272 / 9e-85 OTP85 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G44230 273 / 2e-84 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G48910 270 / 1e-83 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G20540 266 / 3e-83 MEF21 mitochondrial editing factor 21 (.1) AT3G12770 269 / 9e-83 MEF22 mitochondrial editing factor 22 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020657 [exp] 857 / 0 AT1G77170 543 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013319 [exp] 296 / 6e-94 AT4G21065 744 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10005207 [exp] 291 / 3e-91 AT4G21065 741 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10007341 [exp] 277 / 3e-87 AT2G42920 610 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10037229 [exp] 275 / 9e-87 AT1G59720 719 / 0.0 CHLORORESPIRATORY REDUCTION28, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029344 [exp] 278 / 1e-86 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033026 [exp] 276 / 9e-85 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 277 / 1e-84 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010320 [exp] 270 / 7e-84 AT2G34400 658 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G164100 [exp] 609 / 0 AT1G77170 553 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G103600 [exp] 317 / 1e-101 AT1G08070 477 / 7e-160 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G092400 [exp] 296 / 3e-94 AT1G59720 810 / 0.0 CHLORORESPIRATORY REDUCTION28, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G369900 [exp] 294 / 4e-93 AT5G66520 512 / 2e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G001000 [exp] 293 / 2e-92 AT4G21065 793 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.003G223900 [exp] 287 / 5e-91 AT5G56310 508 / 1e-176 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G065500 [exp] 289 / 6e-91 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G086100 [exp] 283 / 1e-89 AT5G15300 675 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G128900 [exp] 283 / 6e-88 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G034900 [exp] 276 / 2e-87 AT4G21065 370 / 2e-122 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10029884 pacid=23159880 polypeptide=Lus10029884 locus=Lus10029884.g ID=Lus10029884.BGIv1.0 annot-version=v1.0 ATGATTGCAGTTTCTCGTTTACAGTGCCTTTCGGCCATTTCGAAAACCCACAATCTCAACCCAATTACCCATTTTCGTCGCCGTTTTCGTACAGAATCTC CGATAGTAACTCCGCCGGAAGATTATCCAGCTATCGCCATAGCATCTCAACTATCCAGCTGCACTGATCTGCAGCAGCTAAACCAAATCTACGGCCACAT TTTGCGAACGAACTTCCTTCACTTCAATCCCGCTTCTTTCCAATGGAACAACGTGATAAGATCGTACACAAAATTAAACCGTCCAAGCCAAGCTCTACAG GTCTACGCATCAATGTCGCGAGCTGGGGTTTTGCCCGATTGCTACACGATCCCCATAGTCTTAAAATCTGCGAGAAGGATTCTGGCCCTTTGGGCTGGCG TGCAGATTCACTCTGTAGCTGTGAAGATAGGGCTCGAATCGAACGAGTATTGCGAGAGTGGGTTCATTAGTCTGTACTCAAAGTGTGGGGAGGCTGATCT TGCACTCAAGGTGTTCGACGAAAGTCCTGATAGAAACTTAGGGTCTTGGAACGCGGCGATTGCTGGCCTTTCTCAAAGCGGGAGGGCTAAAGAGACGGTT GAGATGTTTATCAAGATGATGAGATGTGGGTTGCAGCCTGATGATGTTACTATGGTGAGCGTGACTTCTGCTTGCGGGAGTTTAGGTGATTTGCAGTTGG CTTTGCAGCTTCATAAATGTGTTCTCCAGGCTACCACATTGGAAAAGTCTGATACTTTGATGTTGAATTCTTTGATCGATATGTACGGCAAAAGTGGCAG GATGGACCTGGCAGACATGGTTTTCTCGTCAATGGAGGAGAAAAATAAAAATGTCTCGTCTTGGACGTCGATGATTGTTGGCTACGCAACCCATGGACAC GTCGAGGAAGCTCTCGAATGCTTCGAGTCAATGAGGCAGCAGCCACAAATCCGGCCTAACCACGTGACATTTGTCGGAGTCCTGACCGCTTGTGTCCATG GCGGGAAGGTTGAAGAAGGGAAATGGTATTTTGAAATGATGAGGAATGAGTACTGGTTGATGCCTCAGTTACAGCATTACGGATGCCTGGTCGATCTTCT CGGCCGAGTCGGGCTGCTAAAAGAAGCTAAAGAGGTCGTGGAAGGAATGCCGATGGAGCCTAACGTGGTCATATTCGGGTGTTTGATGGGCGCCTGTGAG AAGTATGCTAATGTGGAAATGGCGGAGTGGGTTGCTAAGCATTTGCAGAGGCTGGAGCCTTGGAACGACGGCGTTTTCGTGGTGTTGTCGAATGTTTATG CCAACAGAGGGATGTGGCGTGAGGTTGAGAATCTGAGGGTGGTCATGAAACAGAGGAGGTTAGAAAAGGTTCCAGCTTATAGCTTGGCAACTCGATGA
AA sequence Show only first row Show all	>Lus10029884 pacid=23159880 polypeptide=Lus10029884 locus=Lus10029884.g ID=Lus10029884.BGIv1.0 annot-version=v1.0 MIAVSRLQCLSAISKTHNLNPITHFRRRFRTESPIVTPPEDYPAIAIASQLSSCTDLQQLNQIYGHILRTNFLHFNPASFQWNNVIRSYTKLNRPSQALQ VYASMSRAGVLPDCYTIPIVLKSARRILALWAGVQIHSVAVKIGLESNEYCESGFISLYSKCGEADLALKVFDESPDRNLGSWNAAIAGLSQSGRAKETV EMFIKMMRCGLQPDDVTMVSVTSACGSLGDLQLALQLHKCVLQATTLEKSDTLMLNSLIDMYGKSGRMDLADMVFSSMEEKNKNVSSWTSMIVGYATHGH VEEALECFESMRQQPQIRPNHVTFVGVLTACVHGGKVEEGKWYFEMMRNEYWLMPQLQHYGCLVDLLGRVGLLKEAKEVVEGMPMEPNVVIFGCLMGACE KYANVEMAEWVAKHLQRLEPWNDGVFVVLSNVYANRGMWREVENLRVVMKQRRLEKVPAYSLATR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77170			Tetratricopeptide repeat (TPR)...		Lus10029884 [exp]	0	1
AT1G06150	bHLH	bHLH089, EMB144...	EMBRYO DEFECTIVE 1444, basic h...		Lus10039974 [exp]	2.0	0.7292
AT3G54980			Pentatricopeptide repeat (PPR)...		Lus10043367 [exp]	7.3	0.6454
AT1G56570		PGN	PENTATRICOPEPTIDE REPEAT PROTE...		Lus10014026 [exp]	12.5	0.6711
AT4G08210			Pentatricopeptide repeat (PPR-...		Lus10028082 [exp]	13.3	0.6772
AT3G56140			Protein of unknown function (D...		Lus10040960 [exp]	16.7	0.6739
AT2G14520			CBS domain-containing protein ...		Lus10020494 [exp]	20.1	0.6422
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Lus10028836 [exp]	23.2	0.6494
AT4G19191			Tetratricopeptide repeat (TPR)...		Lus10031028 [exp]	25.9	0.6587
AT1G04900			Protein of unknown function (D...		Lus10007135 [exp]	27.4	0.6490
AT2G47160		AtBOR1, BOR1	REQUIRES HIGH BORON 1, HCO3- t...		Lus10043101 [exp]	28.5	0.6638

Compare expression of checked genes

Lus10029884 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.