Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09140 240 / 1e-76 ATSRP30.1, ATSRP30.2, SR30, At-SR30 Serine/Arginine-Rich Protein Splicing Factor 30, SERINE-ARGININE PROTEIN 30 (.1.2) AT1G02840 240 / 3e-76 ATSRP34, SR1, SR34, At-SR34 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) AT4G02430 233 / 9e-75 SR34b, At-SR34b Serine/Arginine-Rich Protein Splicing Factor 34b, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G49430 214 / 8e-66 SRP34A, SR34a, At-SR34a Serine/Arginine-Rich Protein Splicing Factor 34a, SER/ARG-rich protein 34A (.1.2.3) AT2G37340 75 / 8e-15 RSZ33, ATRSZ33, RS2Z33, AT-RS2Z33 arginine/serine-rich zinc knuckle-containing protein 33 (.1.2.3) AT3G53500 73 / 3e-14 RSZ32, RS2Z32, At-RS2Z arginine/serine-rich zinc knuckle-containing protein 32, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1), RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.2) AT4G31580 61 / 2e-10 SRZ22, RSZP22, SRZ-22, RSZ22, At-RSZ22 RS-containing zinc finger protein 22, serine/arginine-rich 22 (.1.2) AT3G61860 59 / 1e-09 ATRSP31, At-RS31 arginine/serine-rich splicing factor 31, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G24590 58 / 1e-09 RSZ22a, At-RSZ22a RS-containing zinc finger protein 22a, RNA recognition motif and CCHC-type zinc finger domains containing protein (.1) AT1G23860 56 / 5e-09 SRZ21, SRZ-21, RSZP21, RSZ21, At-RSZ21 RS-containing zinc finger protein 21 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007869 [exp] 249 / 1e-79 AT1G02840 308 / 1e-105 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Lus10003606 [exp] 245 / 2e-78 AT1G02840 299 / 5e-102 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Lus10015564 [exp] 215 / 8e-67 AT3G49430 324 / 6e-112 Serine/Arginine-Rich Protein Splicing Factor 34a, SER/ARG-rich protein 34A (.1.2.3) Lus10032940 [exp] 216 / 1e-66 AT3G49430 328 / 7e-113 Serine/Arginine-Rich Protein Splicing Factor 34a, SER/ARG-rich protein 34A (.1.2.3) Lus10008218 [exp] 213 / 8e-65 AT1G02840 228 / 3e-73 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Lus10030374 [exp] 145 / 9e-41 AT1G02840 147 / 8e-45 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Lus10015039 [exp] 68 / 2e-12 AT3G53500 256 / 8e-85 arginine/serine-rich zinc knuckle-containing protein 32, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1), RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.2) Lus10003987 [exp] 68 / 2e-12 AT3G53500 255 / 2e-84 arginine/serine-rich zinc knuckle-containing protein 32, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1), RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.2) Lus10026925 [exp] 62 / 4e-11 AT4G31580 184 / 2e-59 RS-containing zinc finger protein 22, serine/arginine-rich 22 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G015500 [exp] 268 / 6e-87 AT1G09140 263 / 7e-88 Serine/Arginine-Rich Protein Splicing Factor 30, SERINE-ARGININE PROTEIN 30 (.1.2) Potri.005G024600 [exp] 254 / 2e-81 AT1G09140 258 / 6e-86 Serine/Arginine-Rich Protein Splicing Factor 30, SERINE-ARGININE PROTEIN 30 (.1.2) Potri.014G129900 [exp] 241 / 2e-76 AT1G02840 272 / 5e-91 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Potri.002G205025 [exp] 240 / 4e-76 AT1G02840 272 / 1e-90 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Potri.015G004600 [exp] 209 / 1e-64 AT3G49430 303 / 1e-103 Serine/Arginine-Rich Protein Splicing Factor 34a, SER/ARG-rich protein 34A (.1.2.3) Potri.012G021800 [exp] 207 / 2e-63 AT3G49430 317 / 2e-108 Serine/Arginine-Rich Protein Splicing Factor 34a, SER/ARG-rich protein 34A (.1.2.3) Potri.016G081700 [exp] 76 / 3e-15 AT2G37340 268 / 2e-89 arginine/serine-rich zinc knuckle-containing protein 33 (.1.2.3) Potri.006G215200 [exp] 75 / 1e-14 AT2G37340 266 / 6e-89 arginine/serine-rich zinc knuckle-containing protein 33 (.1.2.3) Potri.018G009100 [exp] 65 / 4e-12 AT4G31580 174 / 2e-55 RS-containing zinc finger protein 22, serine/arginine-rich 22 (.1.2) Potri.006G272400 [exp] 63 / 3e-11 AT2G24590 152 / 4e-47 RS-containing zinc finger protein 22a, RNA recognition motif and CCHC-type zinc finger domains containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10029885 pacid=23159863 polypeptide=Lus10029885 locus=Lus10029885.g ID=Lus10029885.BGIv1.0 annot-version=v1.0 ATGAAAGTTTTACTTGGTAGGTTGAGTGCAGCTGTAGCCTTCTCAACCGACCACCTCGCTTCTCGCCAAGTTTTCCCGACAGGAGATCGACACGTGTCCC AGGAGAGAAGAAGCCAACATTGGCTAATCATGTTCGAGAAGAATCCATTTCCTTTTTCCCCCGAACTTAGACTCTTCCTCGATCATTCATTTCGCCTGCA ACTTTTTTTTTCATCTCAAATCTCTGTCAAAGGTCAGTTCTTTCCTCCTACCCTTTTGATCTTTACCCTGTCGAATGCGTTTTCCTTAAGCTTGGAGGGT CTGTGTTCATTTAGGGATTTTCTCTATTACTCTGGTTTTCAGGTGGGAACAAAGATGAGCAGGATTAGCCGTTCAAGCCGCACTCTTTACGTCGGCAATC TCCCTGGGGATATCCGCTTGAGGGAGGTTGAAGATTTGTTTTACAAGTATGGTCCGATTGTGGACATTGACTTGAAAGTTCCTCCAAGGCCCCCAGGTTA TGCCTTTGTTGAGTTTGAAGATCCTCGTGATGCTGAAGATGCAATCCATGGCCGAGATGGGTATGACTTTGATGGACATCGCCTGCGTGTTGAACTTGCG CATGGAGGACGGAGAAATTCATCACCAGCAGACCGCCATGGCAGTAGTTACAGTAGCAGCAGTAGCCGGGGCCCTTCCAGACGCTCTGATTTTCGCGTTG TTGTCACCGGATTGCCTTCTTCTGCTTCATGGCAAGACCTGAAGGATCATATGCGCCGAGCTGGCGATGTCTGCTTTTCTCAGGTCTACCGTGATCGTGG AGGCATGCGGGGAATTGTGGAGTACACAAACTATGATGATATGAAATATGCTGTAGGTCCATTTCCCTGTTCTTTGCGTTGGATCTTAGGAAGCTCGATG ACACTGAATTTCAGAATACATTCTCTCGTGCCTACATACGGGTACGAGAGGATTATGATGCAAGGAGCTACTCCAGAAGCCCGGATTACTCGAGGAGGAG CTATACCCCAAGTCCGGAGTACTCTAGGAGTCCCAGCCGCAGCCCCTATGCTCGGAGGAGTCGAAGCCGAAGTTATAGCTACAGTCCTAGAAGCAGGAGG TCCAGGTCAAGGTCCGCCTCTCCATATCCTTAAATATGTGAGTTTCCTATACTTCGAAAATCTTCTGTTTTTCAATAAGAATGATGAAGTGTGCTTATCG ATGTTTGTTGTTGCGATAATGGCAGGTAAGCTCGTGAGTGCGATGTGTTTCGAGAATCTGTCATCATTACTCTTTGCGATTGGCTGCTGCTTACTCGAGA CTTCAGAGGATAGTTGTAATCCCGCTTCTTTACCTTATGTTAGAGTGGTCTGTACTAGTACTTACTACATTGTATCTTTCGTCTTTGCTTGTACTTTCAT TTGCAAGCCATCGAGACTCTGA
AA sequence Show only first row Show all	>Lus10029885 pacid=23159863 polypeptide=Lus10029885 locus=Lus10029885.g ID=Lus10029885.BGIv1.0 annot-version=v1.0 MKVLLGRLSAAVAFSTDHLASRQVFPTGDRHVSQERRSQHWLIMFEKNPFPFSPELRLFLDHSFRLQLFFSSQISVKGQFFPPTLLIFTLSNAFSLSLEG LCSFRDFLYYSGFQVGTKMSRISRSSRTLYVGNLPGDIRLREVEDLFYKYGPIVDIDLKVPPRPPGYAFVEFEDPRDAEDAIHGRDGYDFDGHRLRVELA HGGRRNSSPADRHGSSYSSSSSRGPSRRSDFRVVVTGLPSSASWQDLKDHMRRAGDVCFSQVYRDRGGMRGIVEYTNYDDMKYAVGPFPCSLRWILGSSM TLNFRIHSLVPTYGYERIMMQGATPEARITRGGAIPQVRSTLGVPAAAPMLGGVEAEVIATVLEAGGPGQGPPLHILKYVSFLYFENLLFFNKNDEVCLS MFVVAIMAGKLVSAMCFENLSSLLFAIGCCLLETSEDSCNPASLPYVRVVCTSTYYIVSFVFACTFICKPSRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02840		ATSRP34, SR1, S...	Serine/Arginine-Rich Protein S...		Lus10029885 [exp]	0	1
AT3G10410		CPY, SCPL49	CARBOXYPEPTIDASE Y, SERINE CAR...		Lus10038691 [exp]	1.4	0.8880
AT2G20560			DNAJ heat shock family protein...		Lus10017687 [exp]	2.0	0.9045
AT5G42820	C3HZnF	ATU2AF35B	Zinc finger C-x8-C-x5-C-x3-H t...		Lus10009389 [exp]	3.9	0.8710
AT5G04410	NAC	NAC2, ANAC078	Arabidopsis NAC domain contain...		Lus10017458 [exp]	4.6	0.8753
AT1G55310		ATSCL33, SR33, ...	SC35-like splicing factor 33 (...		Lus10029328 [exp]	6.0	0.8205
AT3G07090			PPPDE putative thiol peptidase...		Lus10025931 [exp]	7.5	0.8605
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10040958 [exp]	8.1	0.8654
AT5G22060		ATJ2	ARABIDOPSIS THALIANA DNAJ HOMO...		Lus10004109 [exp]	8.2	0.8719
AT3G44110		ATJ3	DNAJ homologue 3 (.1.2)		Lus10013364 [exp]	9.5	0.8611
AT1G07350		SR45a	serine/arginine rich-like prot...		Lus10018202 [exp]	13.4	0.7947

Compare expression of checked genes

Lus10029885 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.