Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05545 223 / 1e-68 RING/U-box superfamily protein (.1) AT2G47700 157 / 2e-44 RFI2 RED AND FAR-RED INSENSITIVE 2, RING/U-box superfamily protein (.1) AT4G13490 89 / 3e-20 RING/U-box superfamily protein (.1) AT2G15260 78 / 1e-15 RING/U-box superfamily protein (.1) AT1G51930 40 / 0.0007 RING/U-box superfamily protein (.1) AT2G38970 42 / 0.001 Zinc finger (C3HC4-type RING finger) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020655 [exp] 652 / 0 AT3G05545 262 / 1e-83 RING/U-box superfamily protein (.1) Lus10031491 [exp] 257 / 4e-82 AT3G05545 219 / 4e-67 RING/U-box superfamily protein (.1) Lus10040413 [exp] 46 / 5e-05 AT2G38970 846 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10023527 [exp] 44 / 0.0002 AT2G38970 887 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10033425 [exp] 42 / 0.0003 AT3G10910 82 / 6e-20 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G015600 [exp] 409 / 6e-141 AT3G05545 291 / 1e-94 RING/U-box superfamily protein (.1) Potri.005G024700 [exp] 404 / 3e-139 AT3G05545 256 / 5e-81 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10029886 pacid=23159660 polypeptide=Lus10029886 locus=Lus10029886.g ID=Lus10029886.BGIv1.0 annot-version=v1.0 ATGGGGTTGGGGAACAGTGAGAATGAATTGCTTGTCGACGACGGAGACGACGGTGGAGGAGGTCGAGGTGGGGATGGGAAGTCTTTGGCTGCTGTTTCGT GTTCGATTTGTCTGGAGGGTGTGACGGATACGGGGGATCGGTCGTGGGCTAAGCTTCAATGCGGGCACCAATTCCATCTGGATTGCATTGGTTCAGCATT CAATATAAAGGGGGCAATGCAATGCCCTAACTGTCGTAAAATCGAGAAGGGCCAATGGCTCTACGCGAATGGTTGTCGATCGCTCCCTGAGATCAACATG GATGACTGGACCCATGATGAGGAAGTTTACTATAGCGTCTCCGAAGTGTCCCTTGGAGTTCATTATTGTCCTTTTAGTGGTAGCATGGCTAGACTACCTT CATCATTTGAGGAAGGGGAGTTCCCACCACATCCATATCACGATCTGCCCGGCCAACCTGCTGTGTTTGCTGAACATACGGCTGCTATATCGTCCGCAAG TCACTCTTGCCCCTATGTTGCTTACTTCGGACCGGTCCACCCTTCGTCGTCGAGCTCCAGTGCCAGCATTTCAGACGTTTCTAATTTTACCGGTCACTGG AACACTCCTCCATCCGACATGACAAGTTCGTATGGCTTCCCTGCTGTGGATCTTCATTATCACAGCTGGGCGGAGCAGCATCACTACCCTCCATTTTCCA CAACAAGCAGTCGCATCGGCGGAGGTGTTGATCAGCCTCCCCTCCCTCCCAACACTCAAAGAACAGCTCGAAACAGTATCGGTCATCAGAGAGGAGGAGG ATCGTTCATGCCTTTCTTCGTAAGCCCCAGTTCCGGGAGTTCGGTCCTTCCCGCAGGTACTCCGACTTATCAAGGAAGCAATGCTAGGGCACGGGATCGA GTCCAGGCTCTTCAGGATTACTACCAGCAGCAGCAGCAATCTGGCAGTCCCCCGACCATACCGATACGAAGACCGAGCAGCCATAGGGGAGCAATAGCCT CGTCATCCGACCAGTCTGGGTTCTACTTTGTCCCTTCGGGGCATAGTAGCAATAACTACCAAGAAGCGGATAATGTAGCTTCTCGTGCAAGGTTTCGGGC AGAGAGAGATTCGAGTTGGGGGGTTGCCTACCATCAAGGCAGTGGATCGGAGACGGGAATCAGATCCGGTAGCTACCGCCATAGGCATCACGGGTCAGAA AGGGCGTCACAGAACCGTCCATAG
AA sequence Show only first row Show all	>Lus10029886 pacid=23159660 polypeptide=Lus10029886 locus=Lus10029886.g ID=Lus10029886.BGIv1.0 annot-version=v1.0 MGLGNSENELLVDDGDDGGGGRGGDGKSLAAVSCSICLEGVTDTGDRSWAKLQCGHQFHLDCIGSAFNIKGAMQCPNCRKIEKGQWLYANGCRSLPEINM DDWTHDEEVYYSVSEVSLGVHYCPFSGSMARLPSSFEEGEFPPHPYHDLPGQPAVFAEHTAAISSASHSCPYVAYFGPVHPSSSSSSASISDVSNFTGHW NTPPSDMTSSYGFPAVDLHYHSWAEQHHYPPFSTTSSRIGGGVDQPPLPPNTQRTARNSIGHQRGGGSFMPFFVSPSSGSSVLPAGTPTYQGSNARARDR VQALQDYYQQQQQSGSPPTIPIRRPSSHRGAIASSSDQSGFYFVPSGHSSNNYQEADNVASRARFRAERDSSWGVAYHQGSGSETGIRSGSYRHRHHGSE RASQNRP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05545			RING/U-box superfamily protein...		Lus10029886 [exp]	0	1
AT3G52300		ATPQ	"ATP synthase D chain, mitocho...		Lus10023337 [exp]	2.8	0.8174
AT1G65270			unknown protein		Lus10020224 [exp]	7.7	0.8004
AT1G21980		ATPIPK1, ATPIP5...	phosphatidylinositol-4-phospha...		Lus10025636 [exp]	9.8	0.7455
AT1G11360			Adenine nucleotide alpha hydro...		Lus10038561 [exp]	10.6	0.8193
AT4G33640			unknown protein		Lus10020463 [exp]	11.0	0.7967
AT1G12310			Calcium-binding EF-hand family...		Lus10028915 [exp]	11.6	0.8122
AT1G21980		ATPIPK1, ATPIP5...	phosphatidylinositol-4-phospha...		Lus10018200 [exp]	12.6	0.7531
AT5G11770			NADH-ubiquinone oxidoreductase...		Lus10014530 [exp]	14.1	0.7877
AT5G20650		COPT5	copper transporter 5 (.1)		Lus10007092 [exp]	14.1	0.7800
AT1G27310		NTF2A	nuclear transport factor 2A (....		Lus10015772 [exp]	15.1	0.7872

Compare expression of checked genes

Lus10029886 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.