Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16860 353 / 3e-111 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G68930 340 / 1e-107 pentatricopeptide (PPR) repeat-containing protein (.1) AT2G22070 330 / 3e-103 pentatricopeptide (PPR) repeat-containing protein (.1) AT3G12770 323 / 2e-101 MEF22 mitochondrial editing factor 22 (.1) AT3G29230 317 / 3e-100 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G13600 317 / 4e-99 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G27110 316 / 6e-99 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G39530 317 / 4e-98 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G77010 311 / 8e-97 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G15130 304 / 3e-94 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020652 [exp] 1150 / 0 AT5G16860 344 / 2e-106 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016425 [exp] 350 / 9e-111 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10030581 [exp] 350 / 3e-107 AT1G68930 910 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10030908 [exp] 344 / 7e-105 AT1G68930 928 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10000213 [exp] 326 / 9e-103 AT2G13600 435 / 8e-144 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10022890 [exp] 325 / 3e-101 AT3G61170 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024936 [exp] 323 / 2e-100 AT3G61170 855 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015225 [exp] 318 / 8e-98 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017446 [exp] 316 / 1e-97 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G136200 [exp] 364 / 1e-116 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.007G085500 [exp] 350 / 4e-111 AT2G22070 1088 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.018G067500 [exp] 351 / 3e-109 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G041200 [exp] 344 / 4e-108 AT5G16860 1083 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G152000 [exp] 330 / 8e-104 AT3G12770 931 / 0.0 mitochondrial editing factor 22 (.1) Potri.002G155100 [exp] 328 / 2e-102 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G075200 [exp] 323 / 7e-102 AT1G77010 835 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G145000 [exp] 320 / 1e-101 AT1G03540 721 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.012G018800 [exp] 325 / 6e-101 AT2G13600 463 / 3e-152 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G018700 [exp] 324 / 3e-100 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10029888 pacid=23159722 polypeptide=Lus10029888 locus=Lus10029888.g ID=Lus10029888.BGIv1.0 annot-version=v1.0 ATGCCTAACAGAGGTGTGCGCACATGTTCTTTCTCTGTACTCATTGTAGCAGGCAAGACGCCTTTGCAGCAGCGTCGCTGGTACCAACATCATCCTGTAG CATTTGGTCAGGTTAAACCAGAAGCCTTTCATGCTCGGGCTGTTAAAGGCGGTCCCTTGTGTTGCAATCTCGATGCTTCGTGCAACTATCTTCTGAAACT ATACTCCATGAACGCTGATTTGAACGATGCACGCAAGTTATTCAACGAGATTCTTAACAAGGATGTTCGGACATGGACTATTCTGATATCCAGTTTTGCT CGAAATGGAGCAGACTCGGCTGTTTTGAATCTCTGTCGGAATATGCAAGTGGATGGTGTTAAACCAAATCAGTTCACTTTATCAGCTGTTTTGAAGTCAT GCTCTAGCTTGTATGAGCTAAAGAGCGGGAAAGCTGTCCATGGTTGGATATGGAGAAACGGGATCGCCTTCGATGTTGTGCTGGAGAACTCTGTCCTTGA TCTTTATGTTAAATGTGGGGCTTTGAGCTCTGCGGAGAAATTGTTTGGGAAAATGGAGGGTAAAGATACGGTTTCGTGGAATATAATGATGGGTGCATAT CTGCATCTTGGCGATACAAGAAAGTCGCTTGAGTTCTTCGATAGTATGAAGTCGAAAGATGTTGTGAGCTGGAACACCATGATCGATGGGCTAATCAGCT GTGACTGTGGAACCACTGCCTTGGAAGTGCTTTATAGGATGGTCGCTGATGGACCCGATTTCAATGCAGTAACTTTCTCTACGGCATTGAATTTAGTTTC CTGCTTATCAGTTTTACAGCCCGGAAAGGAAATTCATGGGAAGGTTATTAGGCTTCGGTTACATAATCTGGGCTTCATAATGAGTTCGCTTCTAGATATG TATTGTAAATGTAGGGAGATGAGATTGGCTGCCACAATTTTTGACAAAATGTGTTTGAAATCTCCAGCAAGGCGATTCTCCTGGAGTTCTATGGTTTCTG GATACGTTCGAAATGGTGGGTACACTCATGCTTTCGAAACTGTGAAGTATATGTTCAAGGAAGACGACGTTGAGGTGGACATTTATACGCTCACAAGCGT CGTTTCTGGTTGTGCTGCGACTAGCAATTTGGAGCTTGGCAGACAGATCGATGCACATGTTCAGAAGGTAGGCCACAGAGTGGATCCTCATTTGGTTTCA TCATTTATCGATATGTACACCAAATGCGGCAGTTTGAACGACGCGTGGAAGAAGTTCAACGAGAGTAATTACGACTCCAATGTTGTGATCTGGACTTCTA TGATATCTGGATTTGCTTTACATGGACAAGGCAAGGAGGCTGTTGAACTCTTTGAGCTCATGTTAGGAAAGGGCATTGCTCCGAATCATATTACATTTCT TGCTGTTTTGAATGCGTGTAACCATGCTGGATTGTTTGAAGAAGGTGGCAGATATTTTAAGTTAATGCAGACAGTTTACGGCTTGGAGCCGATGATTGAA CAATACACTTGTATGGTTGATCTCTACGGTCGAGCAGGTCGCTTGAACGAGGCAAAAGGATTCATCTTGGAGAACGGTATCTCGCATCTGGCAGTAGTCT GGAAGTCGCTTCTGTCGTCTTGTAGGCTTCATAAAGATGTCGAGGTGGGGAAATGGGTGTGTGAGAGACTGATCGAATTAGAGCCACTCGATACGAGCTC TTACGTTCTTTTGTCGAACATATTTTCTGCTGATGATCATTGGGAGGAGGCTGCCAAAGCTAGGACCTTGATGCTCCAGAGATCAGTTACCAAACTTCCC GGTCAGTCTTGGATCTAG
AA sequence Show only first row Show all	>Lus10029888 pacid=23159722 polypeptide=Lus10029888 locus=Lus10029888.g ID=Lus10029888.BGIv1.0 annot-version=v1.0 MPNRGVRTCSFSVLIVAGKTPLQQRRWYQHHPVAFGQVKPEAFHARAVKGGPLCCNLDASCNYLLKLYSMNADLNDARKLFNEILNKDVRTWTILISSFA RNGADSAVLNLCRNMQVDGVKPNQFTLSAVLKSCSSLYELKSGKAVHGWIWRNGIAFDVVLENSVLDLYVKCGALSSAEKLFGKMEGKDTVSWNIMMGAY LHLGDTRKSLEFFDSMKSKDVVSWNTMIDGLISCDCGTTALEVLYRMVADGPDFNAVTFSTALNLVSCLSVLQPGKEIHGKVIRLRLHNLGFIMSSLLDM YCKCREMRLAATIFDKMCLKSPARRFSWSSMVSGYVRNGGYTHAFETVKYMFKEDDVEVDIYTLTSVVSGCAATSNLELGRQIDAHVQKVGHRVDPHLVS SFIDMYTKCGSLNDAWKKFNESNYDSNVVIWTSMISGFALHGQGKEAVELFELMLGKGIAPNHITFLAVLNACNHAGLFEEGGRYFKLMQTVYGLEPMIE QYTCMVDLYGRAGRLNEAKGFILENGISHLAVVWKSLLSSCRLHKDVEVGKWVCERLIELEPLDTSSYVLLSNIFSADDHWEEAAKARTLMLQRSVTKLP GQSWI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16860			Tetratricopeptide repeat (TPR)...		Lus10029888 [exp]	0	1
AT3G15200			Tetratricopeptide repeat (TPR)...		Lus10031837 [exp]	2.8	0.8841
AT5G48040			Ubiquitin carboxyl-terminal hy...		Lus10011327 [exp]	6.5	0.8568
AT3G24440		VRN5, VIL1	VERNALIZATION 5, VIN3-LIKE 1, ...		Lus10043250 [exp]	17.7	0.8332
AT1G79120			Ubiquitin carboxyl-terminal hy...		Lus10032172 [exp]	19.1	0.8120
AT2G38560		RDO2, TFIIS	REDUCED DORMANCY 2, transcript...		Lus10025131 [exp]	22.5	0.8454
AT3G04260		PDE324, PTAC3	PIGMENT DEFECTIVE 324, plastid...		Lus10003578 [exp]	33.3	0.8351
AT3G20540		PolIB, POLGAMMA...	polymerase I B, polymerase gam...		Lus10040048 [exp]	34.7	0.8312
AT2G40720			Tetratricopeptide repeat (TPR)...		Lus10027366 [exp]	34.9	0.8179
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Lus10022861 [exp]	35.5	0.8283
AT5G07900			Mitochondrial transcription te...		Lus10040817 [exp]	36.5	0.8297

Compare expression of checked genes

Lus10029888 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.