Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14180 97 / 2e-22 Trihelix ASIL2 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) AT3G11100 67 / 1e-12 Trihelix sequence-specific DNA binding transcription factors (.1) AT1G54060 67 / 3e-12 Trihelix ASIL1 6B-interacting protein 1-like 1 (.1) AT5G05550 63 / 2e-11 Trihelix sequence-specific DNA binding transcription factors (.1.2) AT3G58630 54 / 4e-08 Trihelix sequence-specific DNA binding transcription factors (.1) AT3G24490 52 / 2e-07 Trihelix Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) AT3G54390 44 / 8e-05 Trihelix sequence-specific DNA binding transcription factors (.1) AT3G24860 44 / 0.0001 Trihelix Homeodomain-like superfamily protein (.1) AT3G10030 42 / 0.0004 Trihelix aspartate/glutamate/uridylate kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008141 [exp] 185 / 2e-55 AT3G14180 271 / 3e-87 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10013179 [exp] 165 / 1e-47 AT3G14180 256 / 5e-81 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10007273 [exp] 72 / 4e-14 AT3G14180 200 / 4e-62 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10025406 [exp] 70 / 2e-13 AT3G14180 202 / 3e-63 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10015282 [exp] 67 / 3e-13 AT3G58630 140 / 3e-41 sequence-specific DNA binding transcription factors (.1) Lus10025404 [exp] 69 / 5e-13 AT3G14180 197 / 1e-61 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10020652 [exp] 67 / 8e-12 AT5G16860 344 / 2e-106 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028985 [exp] 61 / 2e-11 AT5G05550 95 / 1e-24 sequence-specific DNA binding transcription factors (.1.2) Lus10029220 [exp] 59 / 9e-11 AT3G14180 74 / 4e-17 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T126206 [exp] 154 / 4e-44 AT3G14180 173 / 9e-50 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Potri.003G200000 [exp] 152 / 3e-43 AT3G14180 172 / 2e-49 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Potri.001G026000 [exp] 135 / 6e-37 AT3G14180 186 / 1e-54 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Potri.003G118600 [exp] 65 / 8e-12 AT3G58630 139 / 5e-39 sequence-specific DNA binding transcription factors (.1) Potri.008G071300 [exp] 64 / 1e-11 AT5G05550 209 / 3e-67 sequence-specific DNA binding transcription factors (.1.2) Potri.001G113600 [exp] 62 / 7e-11 AT3G58630 138 / 1e-38 sequence-specific DNA binding transcription factors (.1) Potri.001G179800 [exp] 50 / 7e-07 AT3G24490 206 / 2e-63 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Potri.001G028400 [exp] 44 / 6e-05 AT3G54390 297 / 6e-100 sequence-specific DNA binding transcription factors (.1) Potri.008G027000 [exp] 44 / 0.0001 AT3G10030 457 / 2e-157 aspartate/glutamate/uridylate kinase family protein (.1.2) Potri.003G195300 [exp] 43 / 0.0001 AT3G54390 288 / 2e-96 sequence-specific DNA binding transcription factors (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029889 pacid=23159768 polypeptide=Lus10029889 locus=Lus10029889.g ID=Lus10029889.BGIv1.0 annot-version=v1.0 ATGACCGACATTCAGTGCAAAAATCGGATAGACACTGTGAAGAAGAAGTACAAATCCGAGAAAGCCAAAATCGACGCCGGCAATGGTCCTAGTAAGTGGC ACTTTTACAACCGTCTTGAGCAGTTGATTGGTTCCAACCCCAAGTCTATCGTCGCCACCGCCACCGCTACGAAAACGAAGACTCCTCTCTCTCTGTCTGC GCCGCCAGGCAGATCTATCAGGATCGCCATACCTGGATCCGGCACCGCAATCCCCGTCCGTAGCCGGAGCGAGCAGCAGTACCAGTTCGTTAAGCCACAA ATGAAGGGTGGTTCAGGTAATAGGAAGAGTAACAGTAGTCAGAAGCTGAAGATACAATACGGGAAAAGAGGAACAGCAGCGATGAGGGATTTCTCGTCGG AAGACGAGGAAGAAGAGGAGGAGGAGGAGGAGGTGGCATTTCCCGATTCCGATGACAGTTTCCCGCCGGAGAAAAAGAAGAGAAGAGTAGCTGCTGTAGG GATGCAGCAGCATCGGCAGAATAGAGTGGGGAAGGAGAAGAAGGGAACGTGGGGGAGTTCAATTCGGATGTTGACAGCTTCGATACTGAAACTTGTGGAA GCTTACGAGCAAGCTGAGAACGCCAAGCTGCAACAAGTGGTGGAGATGGAGAAGACAAGGATGAAGTTCGCCAAAGAGCTGGAGTTGCAGAGGATGCAAT TCTTTATGAAAACCCAGATGGAGCTATCTGAGTTGGAACACAGAAGAGGATCCGGAGGGGGAGGAGGAGGAGGAGGAGGTGGAGGAGAAGGCGGAATAGG ATTTGTTGCAGCAGCGGCAGCCGCCATTGCTGCTACTTCGAGTCATCATGATGGTAATCAGCATCGAAGTCATGATGATGATGACTATGATCATCTTAGT GACGGTGGTAAGCCTGTCAGGGCGGATACCATTAATAGTGACAGTGATAACTGA
AA sequence Show only first row Show all	>Lus10029889 pacid=23159768 polypeptide=Lus10029889 locus=Lus10029889.g ID=Lus10029889.BGIv1.0 annot-version=v1.0 MTDIQCKNRIDTVKKKYKSEKAKIDAGNGPSKWHFYNRLEQLIGSNPKSIVATATATKTKTPLSLSAPPGRSIRIAIPGSGTAIPVRSRSEQQYQFVKPQ MKGGSGNRKSNSSQKLKIQYGKRGTAAMRDFSSEDEEEEEEEEEVAFPDSDDSFPPEKKKRRVAAVGMQQHRQNRVGKEKKGTWGSSIRMLTASILKLVE AYEQAENAKLQQVVEMEKTRMKFAKELELQRMQFFMKTQMELSELEHRRGSGGGGGGGGGGGEGGIGFVAAAAAAIAATSSHHDGNQHRSHDDDDYDHLS DGGKPVRADTINSDSDN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14180	Trihelix	ASIL2	Arabidopsis 6B-interacting pr...		Lus10029889 [exp]	0	1
AT1G10580			Transducin/WD40 repeat-like su...		Lus10030869 [exp]	5.7	0.8497
AT1G75080	BZR	BZR1	BRASSINAZOLE-RESISTANT 1, Bras...		Lus10026036 [exp]	7.1	0.8976
AT5G27990			Pre-rRNA-processing protein TS...		Lus10006795 [exp]	13.3	0.8334
AT5G03970			F-box associated ubiquitinatio...		Lus10042547 [exp]	21.4	0.8544
AT4G32980	HD	ATH1	homeobox gene 1 (.1)		Lus10026432 [exp]	21.6	0.8786
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Lus10019214 [exp]	22.2	0.8408
AT1G47200		WPP2	WPP domain protein 2 (.1)		Lus10042643 [exp]	22.8	0.8562
AT5G48820		ICK6, KRP3	KIP-RELATED PROTEIN 3, inhibit...		Lus10011862 [exp]	26.0	0.8489
AT4G31350			Core-2/I-branching beta-1,6-N-...		Lus10020159 [exp]	26.5	0.8610
AT5G25510			Protein phosphatase 2A regulat...		Lus10013141 [exp]	28.6	0.8346

Compare expression of checked genes

Lus10029889 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.