Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05520 372 / 5e-130 Subunits of heterodimeric actin filament capping protein Capz superfamily (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020651 [exp] 494 / 8e-179 AT3G05520 377 / 1e-132 Subunits of heterodimeric actin filament capping protein Capz superfamily (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G017000 [exp] 444 / 1e-158 AT3G05520 471 / 4e-169 Subunits of heterodimeric actin filament capping protein Capz superfamily (.1.2) Potri.005G025300 [exp] 428 / 5e-152 AT3G05520 471 / 3e-169 Subunits of heterodimeric actin filament capping protein Capz superfamily (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01267 [flax] [poplar] F-actin_cap_A F-actin capping protein alpha subunit
Representative CDS sequence Show only first row Show all	>Lus10029890 pacid=23159885 polypeptide=Lus10029890 locus=Lus10029890.g ID=Lus10029890.BGIv1.0 annot-version=v1.0 ATGGCGGAAGAGGAGTGCGAGATGAGCGAGGAGCAGAAGAAAGAGATCGCGAAATGGTTCCTCCTCAACTCTCCTTCCGGCGAAATCCAGTACATCGCCA AAGATTTGAGATCGGTGTTGAATGACGATAAGGTGTATGATGAGGCTACCTTGGAGGCGTTTCCTATGTATAATAAGTCTCACTTGATTTGTCTCGAGCT TCCCTGCCGAAGCGGCGACGTGCTGATCACACCTTATAATGAGTTGGAGGAGAATCAGTTCATTGAGCCTCGGACTGCACAGGTTGTGACAATAGATCAT GTGAAGCAAGCTTGTACAGAGGTGAGACCTGCAGCTGACGAGGAACTTCCTTCACCTTACATCGAGGAATTCCGTTATGCTCTGGATGGAGAAATGTTGA AATATGTAGAAGAAGCTTATCCGAAAGGTGTCTGCTCTGTCTTCTGTACCGATGGCAAAGATGCCGAGGAACCAGGAAGTAATTTTGAGTTTGTTGTAGT CCTATCCGCTGCAAGAAATAGCCCCAAGAATTTCTGCAATGGAAGTTGGCGGTCTGTGTGGAACATAAAGTTCAAAGAAGATGTACAAGTACTTGAAATC AAAGGAAAATTGCAGGTTGATGCTCACTATTTCGAGGAGGGGAATGTTCAGTTGGATGCGGAACAGGAATGCAAGGATGGAACAATCTTTCAGGCACCTG AGGATTGCGCAATTTCAATAGCCAACATTATTCGTCACCACGAGACAGAGTACATGGGATCCCTTGAGAATTCAATCCCGAGCTTGGGTGTCCTTACTAA CAGCGAGCACTTACAGGCATCATACTCAAATTTGCCAGACACTACTTTCAAGAAACGGGTTAATTTCTTGTTCAGTTGTTCTAATTACGTGGGTAAGCAA ACAGGCCACCGGCTACCGGAAGCAGGTGGTTTTTAG
AA sequence Show only first row Show all	>Lus10029890 pacid=23159885 polypeptide=Lus10029890 locus=Lus10029890.g ID=Lus10029890.BGIv1.0 annot-version=v1.0 MAEEECEMSEEQKKEIAKWFLLNSPSGEIQYIAKDLRSVLNDDKVYDEATLEAFPMYNKSHLICLELPCRSGDVLITPYNELEENQFIEPRTAQVVTIDH VKQACTEVRPAADEELPSPYIEEFRYALDGEMLKYVEEAYPKGVCSVFCTDGKDAEEPGSNFEFVVVLSAARNSPKNFCNGSWRSVWNIKFKEDVQVLEI KGKLQVDAHYFEEGNVQLDAEQECKDGTIFQAPEDCAISIANIIRHHETEYMGSLENSIPSLGVLTNSEHLQASYSNLPDTTFKKRVNFLFSCSNYVGKQ TGHRLPEAGGF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05520			Subunits of heterodimeric acti...		Lus10029890 [exp]	0	1
AT2G31680		AtRABA5d	RAB GTPase homolog A5D (.1)		Lus10025516 [exp]	1.0	0.9177
AT3G05100			S-adenosyl-L-methionine-depend...		Lus10004147 [exp]	1.4	0.8770
AT4G18710		DWF12, UCU1, BI...	ULTRACURVATA 1, DWARF 12, BRAS...		Lus10015274 [exp]	5.0	0.8623
AT3G13320		ATCAX2, CAX2	cation exchanger 2 (.1)		Lus10009431 [exp]	5.7	0.8513
AT1G69430			unknown protein		Lus10036796 [exp]	6.2	0.8706
AT4G18710		DWF12, UCU1, BI...	ULTRACURVATA 1, DWARF 12, BRAS...		Lus10025395 [exp]	6.5	0.8525
AT2G47070	SBP	SPL1	squamosa promoter binding prot...		Lus10010071 [exp]	7.7	0.8431
AT4G31990		AAT3, ATAAT1, A...	ASPARTATE AMINOTRANSFERASE DEF...		Lus10001753 [exp]	8.2	0.8373
AT3G49720			unknown protein		Lus10039648 [exp]	9.4	0.8430
AT1G05850		CTL1, HOT2, ERH...	POM-POM1, SENSITIVE TO HOT TEM...		Lus10037430 [exp]	10.1	0.8539

Compare expression of checked genes

Lus10029890 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.