Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05510 255 / 9e-80 Phospholipid/glycerol acyltransferase family protein (.1.2) AT1G09130 178 / 9e-51 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.3) AT4G17040 117 / 5e-29 HON5, CLPR4 happy on norflurazon 5, CLP protease R subunit 4 (.1) AT1G49970 103 / 1e-23 SVR2, NCLPP5, CLPR1 SUPPRESSOR OF VARIEGATION 2, NUCLEAR CLPP 5, CLP protease proteolytic subunit 1 (.1) AT1G78690 96 / 1e-21 Phospholipid/glycerol acyltransferase family protein (.1) AT5G45390 83 / 3e-17 NCLPP3, NCLPP4, CLPP4 NUCLEAR-ENCODED CLP PROTEASE P4, CLP protease P4 (.1) AT1G66670 69 / 1e-12 NCLPP3, NCLPP4, CLPP3 CLP protease proteolytic subunit 3 (.1) AT1G02560 69 / 1e-12 NCLPP5, NCLPP1, CLPP5 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020650 [exp] 464 / 8e-159 AT3G05510 438 / 1e-150 Phospholipid/glycerol acyltransferase family protein (.1.2) Lus10020649 [exp] 387 / 2e-132 AT1G09130 151 / 4e-44 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.3) Lus10004783 [exp] 101 / 1e-23 AT1G78690 353 / 2e-123 Phospholipid/glycerol acyltransferase family protein (.1) Lus10003953 [exp] 96 / 2e-21 AT1G49970 318 / 8e-107 SUPPRESSOR OF VARIEGATION 2, NUCLEAR CLPP 5, CLP protease proteolytic subunit 1 (.1) Lus10020990 [exp] 94 / 1e-20 AT1G49970 308 / 1e-102 SUPPRESSOR OF VARIEGATION 2, NUCLEAR CLPP 5, CLP protease proteolytic subunit 1 (.1) Lus10012156 [exp] 79 / 3e-16 AT5G45390 293 / 1e-99 NUCLEAR-ENCODED CLP PROTEASE P4, CLP protease P4 (.1) Lus10007589 [exp] 79 / 4e-16 AT5G45390 293 / 2e-99 NUCLEAR-ENCODED CLP PROTEASE P4, CLP protease P4 (.1) Lus10000449 [exp] 70 / 9e-13 AT1G66670 285 / 1e-95 CLP protease proteolytic subunit 3 (.1) Lus10010979 [exp] 67 / 6e-12 AT1G66670 288 / 6e-97 CLP protease proteolytic subunit 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G025400 [exp] 276 / 2e-86 AT3G05510 529 / 0.0 Phospholipid/glycerol acyltransferase family protein (.1.2) Potri.013G017166 [exp] 169 / 2e-47 AT1G09130 451 / 2e-159 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.3) Potri.003G083300 [exp] 115 / 2e-28 AT4G17040 441 / 2e-157 happy on norflurazon 5, CLP protease R subunit 4 (.1) Potri.009G089300 [exp] 111 / 3e-26 AT1G49970 459 / 7e-162 SUPPRESSOR OF VARIEGATION 2, NUCLEAR CLPP 5, CLP protease proteolytic subunit 1 (.1) Potri.001G295266 [exp] 90 / 1e-20 AT1G49970 306 / 5e-105 SUPPRESSOR OF VARIEGATION 2, NUCLEAR CLPP 5, CLP protease proteolytic subunit 1 (.1) Potri.011G146800 [exp] 91 / 3e-20 AT1G78690 380 / 9e-134 Phospholipid/glycerol acyltransferase family protein (.1) Potri.003G103300 [exp] 79 / 7e-16 AT5G45390 383 / 9e-135 NUCLEAR-ENCODED CLP PROTEASE P4, CLP protease P4 (.1) Potri.004G092100 [exp] 75 / 2e-14 AT1G66670 441 / 2e-156 CLP protease proteolytic subunit 3 (.1) Potri.007G071700 [exp] 74 / 3e-14 AT5G23140 383 / 1e-135 nuclear-encoded CLP protease P7 (.1) Potri.002G195200 [exp] 67 / 8e-12 AT1G02560 474 / 2e-170 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0127 [flax] [poplar] ClpP_crotonase PF00574 [flax] [poplar] CLP_protease Clp protease CL0228 [flax] [poplar] Acyltransferase PF01553 [flax] [poplar] Acyltransferase Acyltransferase
Representative CDS sequence Show only first row Show all	>Lus10029891 pacid=23159656 polypeptide=Lus10029891 locus=Lus10029891.g ID=Lus10029891.BGIv1.0 annot-version=v1.0 ATGGCTGTTTCTCTTCGCGTCCTCCCAAATCCCCCCTCCATCCCGCCCTCTGCCTTCAGTTCGTCTTCTCTCCGAAGGAGAAACATCAAGAACTTCAGCT GCTGCTGTACCGCCGCAGGAGGTTCCTCGGATCCCATAGGAAGCGGTTCCCGTCTCTACATGCCTGATGGTTATTTCACCCCGCAGCTTGCTTCGCCCAA AGCCATTGGATCTATTTATGAAGCGGAGAAGTATACACGTCAGATTCCGAAGAGGAAGAACCGGAGTTTTCGATCTGTGAGAGTTGTCCGTATCTGGATG CCTCTTGTACCAAAAGTGGTCGAGTTTATTCTTGGGCAGCTGATGAAAATGGATTGGAAGGATCCCAAAGAACCTATTTACGTGCTTATAAACTCTACTG GGACAACTCGTGAAGATGGCGAAGTAGTTGCGAGAGAGACACAAGGGTTCGCAGTCTATGATGCATTGATGACAATGCGATGCCCGATAACCACAATTGC TATAGGTTTCGCATATGGCCACGCTGCTCTTTTGCTTGCTGCAGGAACAAAGGGAAGGCGGTTTATGTATCCAGATGCACAAATCGGTATCATGCATCCG CAAGTCGCACCTTCTGGTTTGATCCCGGCTGATTCTGTCGAAACCCGTTTAACTGAGGCTGTCTATCAGAAAGACGAATACTTGAATCTAATGTCCAAAC ACACTGGAAAGAAACAGCTTCTTATTCGTATTGTTCTTCATTTTCGAATCGAAAAGTCGGTGGAGTTTCTCACTAATGCGATCAGGAAACCGTTGTATCT GGACCCCATACAAGCAGTTGAGTATGGTGTTGTCGACAGGGTTAGCAACCATGTTGCTTCAGTCGATGACCCACTTGTAATTGCCTCATTGCTACCACCA AGAGTACTTTTGGATGCTCAGAACTTGAGGAATCCTGTCACTTCTGCCTTCTTTAAGACTGTCAAAGTCTTGCCCCTCTCTCGTGGTCATGGAGTTTATC AGAAGGGTATGGACAAGGCAATTGCGAAGCTGAACACTGGTGGCTGGGTTCACATCTTCCCGGAGGGTAGACTTTTAAGGATGGTGGGAAAACTATGGGG TCTATTAAAAGAGGTGTTGGGAGGTAAGGATCTGTTGGTTCTTGATGCTGATACTCTCCCCATTGTAGTCCCGTTTGCGCACACTGGAATGCAAGAGATC ATGCCCGTAGGATCAAGCCTTCCGATGATTGGAAAGACGGTAACCGTTCTTGTTGGGGACCCCATTTATCTCGACGATCTAGCAAACACTGAACTCGAAA GGGAAGACCTCCCCAGAGGAAAGCTCTACGATGCCGTTGCCAGTAGGATCAGTGACCAATTGCTGAAAATGAAGGCCACGGTAGAACAGCTAGCCTTACA CCAGTCTTCTCCAGAATTGTTGCAGCAACAACTCGACTGGGAGGATTCATATGCTCGGATAGAGTCAGCTAAAGATCACGAATTTCGCAAGTCCACTCTC AGCAATAGTGCCTCACAGGAGTCGAGATATGGAACCTCCGCTTCCGTGGGCAGAGTTTCCTCGAGAATGGCTGCTTGCTGCCACTCCACTGAGCTCGTGG GTTTTTCCGCCAGAGGTCTGTTCTCGAGGCTTGAACCCAAGGTAGTAGATAGTCCTTTGGTTGGAGGTCCGGGTCCGTTGAGAGCCTGGAGACAGTATTT TGAAGACAACTTACAGCAACAACGTATGATTACCTGCTAG
AA sequence Show only first row Show all	>Lus10029891 pacid=23159656 polypeptide=Lus10029891 locus=Lus10029891.g ID=Lus10029891.BGIv1.0 annot-version=v1.0 MAVSLRVLPNPPSIPPSAFSSSSLRRRNIKNFSCCCTAAGGSSDPIGSGSRLYMPDGYFTPQLASPKAIGSIYEAEKYTRQIPKRKNRSFRSVRVVRIWM PLVPKVVEFILGQLMKMDWKDPKEPIYVLINSTGTTREDGEVVARETQGFAVYDALMTMRCPITTIAIGFAYGHAALLLAAGTKGRRFMYPDAQIGIMHP QVAPSGLIPADSVETRLTEAVYQKDEYLNLMSKHTGKKQLLIRIVLHFRIEKSVEFLTNAIRKPLYLDPIQAVEYGVVDRVSNHVASVDDPLVIASLLPP RVLLDAQNLRNPVTSAFFKTVKVLPLSRGHGVYQKGMDKAIAKLNTGGWVHIFPEGRLLRMVGKLWGLLKEVLGGKDLLVLDADTLPIVVPFAHTGMQEI MPVGSSLPMIGKTVTVLVGDPIYLDDLANTELEREDLPRGKLYDAVASRISDQLLKMKATVEQLALHQSSPELLQQQLDWEDSYARIESAKDHEFRKSTL SNSASQESRYGTSASVGRVSSRMAACCHSTELVGFSARGLFSRLEPKVVDSPLVGGPGPLRAWRQYFEDNLQQQRMITC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05510			Phospholipid/glycerol acyltran...		Lus10029891 [exp]	0	1
AT3G48730		GSA2	glutamate-1-semialdehyde 2,1-a...		Lus10029064 [exp]	1.0	0.9588
AT4G38020			tRNA/rRNA methyltransferase (S...		Lus10035953 [exp]	1.4	0.9570
AT1G63680		APG13, ATMURE, ...	PIGMENT DEFECTIVE EMBRYO 316, ...		Lus10002010 [exp]	4.9	0.9472
AT4G26370			antitermination NusB domain-co...		Lus10010325 [exp]	4.9	0.9442
AT5G22640		EMB1211	embryo defective 1211, MORN (M...		Lus10020545 [exp]	4.9	0.9475
AT3G54090		FLN1	fructokinase-like 1 (.1)		Lus10017191 [exp]	5.3	0.9413
AT1G06190			Rho termination factor (.1.2)		Lus10024898 [exp]	6.2	0.9255
AT2G05990		ENR1, MOD1	MOSAIC DEATH 1, ENOYL-ACP REDU...		Lus10016274 [exp]	6.3	0.9446
AT4G34160		CYCD3;1	CYCLIN D3;1 (.1)		Lus10014089 [exp]	6.6	0.9034
AT1G66520		PDE194	pigment defective 194, formylt...		Lus10000450 [exp]	6.8	0.9030

Compare expression of checked genes

Lus10029891 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.