Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05500 266 / 5e-90 Rubber elongation factor protein (REF) (.1) AT2G47780 144 / 3e-42 Rubber elongation factor protein (REF) (.1) AT1G67360 110 / 4e-29 Rubber elongation factor protein (REF) (.1), Rubber elongation factor protein (REF) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020648 [exp] 387 / 1e-137 AT3G05500 317 / 2e-110 Rubber elongation factor protein (REF) (.1) Lus10015171 [exp] 297 / 2e-102 AT3G05500 282 / 1e-96 Rubber elongation factor protein (REF) (.1) Lus10031493 [exp] 296 / 2e-100 AT3G05500 285 / 4e-96 Rubber elongation factor protein (REF) (.1) Lus10015786 [exp] 111 / 1e-27 AT1G67370 600 / 0.0 ASYNAPTIC 1, DNA-binding HORMA family protein (.1) Lus10037019 [exp] 103 / 8e-25 AT1G67370 621 / 0.0 ASYNAPTIC 1, DNA-binding HORMA family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G025700 [exp] 293 / 8e-101 AT3G05500 277 / 1e-94 Rubber elongation factor protein (REF) (.1) Potri.013G017300 [exp] 285 / 7e-98 AT3G05500 258 / 6e-87 Rubber elongation factor protein (REF) (.1) Potri.002G206000 [exp] 215 / 2e-70 AT3G05500 238 / 4e-79 Rubber elongation factor protein (REF) (.1) Potri.001G055300 [exp] 123 / 2e-34 AT1G67360 249 / 1e-83 Rubber elongation factor protein (REF) (.1), Rubber elongation factor protein (REF) (.2) Potri.003G173100 [exp] 112 / 3e-30 AT1G67360 239 / 7e-80 Rubber elongation factor protein (REF) (.1), Rubber elongation factor protein (REF) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05755 [flax] [poplar] REF Rubber elongation factor protein (REF)
Representative CDS sequence Show only first row Show all	>Lus10029892 pacid=23159691 polypeptide=Lus10029892 locus=Lus10029892.g ID=Lus10029892.BGIv1.0 annot-version=v1.0 ATGGCTGATGGAAACCCTAGCCCCCCTGCTTCTACCCCACTGACGAAGGAGGAAGAGGAGAGGCTGAAGTACCTTGAGTTCGTGCAAGCGGCAGCGGTTC ACGCTCTGGTGACGTTCACCAACCTCTACATATACGCCAAGGACAAAGCCGGCCCGTTGAAACCTGGTGTGCAGACCGTCGAAGGAACGGTCAAGAGTGT GGTTGGCCCTGTTTACGATAAGTTACAGGATGTGCCGATTGAAGTTCTTAAGTTCGTCGATCGCAAGGTGGACGAATCCGTTACTGGCCTGGACCGCCGT GTACCCCCAGTCGTGAAGCAAGTCTCCGCTCAAGCACTCTCCGCAGCGCAAGCCGCTCCGGGAGCTGCCCGTGCTGTTGCTTCCGAAGTTCAGCGATCCG GTGTGAAGGAAACCGTCACCGGACTGGCCAAAAACGTCTACACCAAGTACGAGCCCAAAGCCAAGGAGCTCTACACCGAGTATGAACCCAAAGCAGAACA GTGTGCCGTTTCGGCCTGGCGTAGGCTCAACCAGCTCCCGCTCTTCCCGCAGGTGGCTCAAGTGGTCGTCCCGACCGCTGCTTACTGGTCCGAAAGGTAC AACGAGACAGTGGTTAGCACCGCAGAGAAAGGGTACAAGGTTTCCACTTTCTTGCCCTTGGTGCCTACCAAGAGGATTGCTAAAGTGTTCAGTGATCCTG CGGCTGGAACAACTCCGTTGGTGTCCAACTAA
AA sequence Show only first row Show all	>Lus10029892 pacid=23159691 polypeptide=Lus10029892 locus=Lus10029892.g ID=Lus10029892.BGIv1.0 annot-version=v1.0 MADGNPSPPASTPLTKEEEERLKYLEFVQAAAVHALVTFTNLYIYAKDKAGPLKPGVQTVEGTVKSVVGPVYDKLQDVPIEVLKFVDRKVDESVTGLDRR VPPVVKQVSAQALSAAQAAPGAARAVASEVQRSGVKETVTGLAKNVYTKYEPKAKELYTEYEPKAEQCAVSAWRRLNQLPLFPQVAQVVVPTAAYWSERY NETVVSTAEKGYKVSTFLPLVPTKRIAKVFSDPAAGTTPLVSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05500			Rubber elongation factor prote...		Lus10029892 [exp]	0	1
AT1G11360			Adenine nucleotide alpha hydro...		Lus10039730 [exp]	1.0	0.8639
AT5G56600		PRF3, PFN3	profilin 3 (.1.2)		Lus10043040 [exp]	1.4	0.8565
AT3G52710			unknown protein		Lus10022708 [exp]	4.6	0.7972
AT4G09460	MYB	ATMYB6, ATMYB8	myb domain protein 6 (.1)		Lus10016948 [exp]	6.9	0.7837
AT4G38690			PLC-like phosphodiesterases su...		Lus10025062 [exp]	13.3	0.7678
AT4G29350		PRF2, PFN2, PRO...	profilin 2 (.1)		Lus10012936 [exp]	13.7	0.7709
AT1G12310			Calcium-binding EF-hand family...		Lus10004332 [exp]	13.9	0.7955
AT5G20650		COPT5	copper transporter 5 (.1)		Lus10007092 [exp]	16.0	0.7490
AT2G44600			unknown protein		Lus10043351 [exp]	17.0	0.7341
AT1G79340		AtMCP2d, ATMC4	metacaspase 2d, metacaspase 4 ...		Lus10001835 [exp]	19.3	0.7574

Compare expression of checked genes

Lus10029892 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.