Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15800 110 / 1e-32 RALFL33 ralf-like 33 (.1) AT3G16570 99 / 1e-27 ATRALF23, RALFL23 ARABIDOPSIS RAPID ALKALINIZATION FACTOR 23, rapid alkalinization factor 23 (.1) AT3G05490 98 / 2e-27 RALFL22 ralf-like 22 (.1) AT1G02900 96 / 1e-26 RALF1, RALFL1, ATRALF1 RALF-LIKE 1, rapid alkalinization factor 1 (.1) AT2G33775 85 / 2e-22 RALFL19 ralf-like 19 (.1) AT1G28270 83 / 1e-21 RALFL4 ralf-like 4 (.1) AT4G13950 81 / 5e-21 RALFL31 ralf-like 31 (.1) AT3G23805 74 / 4e-18 RALFL24 ralf-like 24 (.1) AT5G67070 64 / 8e-14 RALFL34 ralf-like 34 (.1) AT4G14010 53 / 6e-10 RALFL32 ralf-like 32 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020647 [exp] 199 / 2e-67 AT4G15800 119 / 5e-36 ralf-like 33 (.1) Lus10015172 [exp] 119 / 1e-35 AT4G15800 107 / 2e-31 ralf-like 33 (.1) Lus10000502 [exp] 112 / 8e-33 AT4G15800 134 / 1e-41 ralf-like 33 (.1) Lus10037512 [exp] 104 / 4e-30 AT4G15800 131 / 9e-41 ralf-like 33 (.1) Lus10015316 [exp] 83 / 1e-21 AT1G28270 100 / 7e-29 ralf-like 4 (.1) Lus10025444 [exp] 83 / 2e-21 AT1G28270 100 / 2e-28 ralf-like 4 (.1) Lus10016646 [exp] 71 / 6e-17 AT4G13950 100 / 1e-28 ralf-like 31 (.1) Lus10022561 [exp] 71 / 1e-16 AT4G13950 100 / 1e-28 ralf-like 31 (.1) Lus10005541 [exp] 68 / 7e-16 AT1G28270 69 / 3e-16 ralf-like 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G208200 [exp] 110 / 2e-32 AT4G15800 132 / 2e-41 ralf-like 33 (.1) Potri.013G017400 [exp] 105 / 3e-30 AT4G15800 123 / 1e-37 ralf-like 33 (.1) Potri.005G025800 [exp] 103 / 1e-29 AT4G15800 138 / 1e-43 ralf-like 33 (.1) Potri.014G131800 [exp] 99 / 5e-28 AT4G15800 123 / 1e-37 ralf-like 33 (.1) Potri.004G045000 [exp] 93 / 2e-25 AT1G28270 103 / 4e-30 ralf-like 4 (.1) Potri.004G044900 [exp] 93 / 2e-25 AT1G28270 103 / 4e-30 ralf-like 4 (.1) Potri.017G059500 [exp] 77 / 5e-19 AT4G13950 96 / 2e-26 ralf-like 31 (.1) Potri.001G320700 [exp] 69 / 5e-16 AT3G23805 96 / 1e-26 ralf-like 24 (.1) Potri.014G026900 [exp] 67 / 3e-15 AT5G67070 94 / 6e-26 ralf-like 34 (.1) Potri.007G044700 [exp] 63 / 1e-13 AT5G67070 119 / 1e-35 ralf-like 34 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05498 [flax] [poplar] RALF Rapid ALkalinization Factor (RALF)
Representative CDS sequence Show only first row Show all	>Lus10029893 pacid=23159734 polypeptide=Lus10029893 locus=Lus10029893.g ID=Lus10029893.BGIv1.0 annot-version=v1.0 ATGGCCAGCAGTAGCAATCTGATTTGTGTCACAGCGGCCATCTCCCTGGCTCTGATGATGTTGGTCATCAGCTCAGCTCCGGCGGCCGCCGCTAGCGGCG GCGCCGGAGGAATGGAGAGTTGGATACCCATCAGATCTTCAGATTCAAGTGAAATGGAGTTGGTTGGTGGTGATGAAGAGGAGTTCGGGATGGAGTCAGA GAGCAGCAGGAGGATGCTTCAGCAGAACAACAGGTACATCAGCTATGGAGCTCTCCGGAGGAACACTGTGCCTTGCTCCAGACGTGGAGCTTCTTACTAC AATTGCAGGTCCGGTGCTCAAGCTAACCCGTACACCCGTGGCTGCAGCGCCATTACCAGATGCAGACGTTGA
AA sequence Show only first row Show all	>Lus10029893 pacid=23159734 polypeptide=Lus10029893 locus=Lus10029893.g ID=Lus10029893.BGIv1.0 annot-version=v1.0 MASSSNLICVTAAISLALMMLVISSAPAAAASGGAGGMESWIPIRSSDSSEMELVGGDEEEFGMESESSRRMLQQNNRYISYGALRRNTVPCSRRGASYY NCRSGAQANPYTRGCSAITRCRR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15800		RALFL33	ralf-like 33 (.1)		Lus10029893 [exp]	0	1
AT3G21780		UGT71B6	UDP-glucosyl transferase 71B6 ...		Lus10026793 [exp]	1.4	0.9443
AT2G46640			unknown protein		Lus10030218 [exp]	2.0	0.9377
AT2G41905			unknown protein		Lus10042354 [exp]	2.2	0.9338
AT1G57790			F-box family protein (.1)		Lus10024904 [exp]	11.3	0.9214
AT3G24530			AAA-type ATPase family protein...		Lus10011096 [exp]	19.8	0.8806
AT1G24430			HXXXD-type acyl-transferase fa...		Lus10017469 [exp]	20.2	0.9422
AT1G72620			alpha/beta-Hydrolases superfam...		Lus10022106 [exp]	24.4	0.9388
AT2G41640			Glycosyltransferase family 61 ...		Lus10018048 [exp]	28.5	0.8431
AT1G45688			unknown protein		Lus10010232 [exp]	28.6	0.8753
AT4G21480		STP12	sugar transporter protein 12 (...		Lus10040994 [exp]	36.5	0.9316

Compare expression of checked genes

Lus10029893 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.