Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05480 370 / 2e-125 ATRAD9 cell cycle checkpoint control protein family (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020646 [exp] 697 / 0 AT3G05480 500 / 5e-176 cell cycle checkpoint control protein family (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G017500 [exp] 448 / 9e-156 AT3G05480 558 / 0.0 cell cycle checkpoint control protein family (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0060 [flax] [poplar] DNA_clamp PF04139 [flax] [poplar] Rad9 Rad9
Representative CDS sequence Show only first row Show all	>Lus10029894 pacid=23159682 polypeptide=Lus10029894 locus=Lus10029894.g ID=Lus10029894.BGIv1.0 annot-version=v1.0 ATGGAGTTCAGTCTAAGCGGGAACGCCCTCAAGGCTTTTGCGCGGTGCATTACTTTCCTAGGTCGTATAGGAAACGAGCTCGCAGTTGAAGCTTCTTCTT CTTCTCAGGTTTATACGGTATTTGGAACTCCGGTTAAGTTCAGCGTTCTCGTCAAGGCTGTTTGCTCCGTCCTTAGGACGCCTGTTCAGAGCATCGATCA TTTAATAGTTCAATTGGCTGATCCTGATGCTTCCAAAGTGCAATGGACCTTGGAATGCAATAACGGTATGAGAAAAGCCTATTCGATTACTTGCAATGCT GAGCCGGACATACAACATTTGGCGCTTGACAGGAGTAGATTTCCTAGCAGCTTTATAGTTAGGCCACGTGATCTAAACAGGCTGCTTGCGAATTTTCAAT CATCGCTCCAGGAGATAACCATCATAGCAACAGAGATAAATTCCTTGCCTTCTGATGCTGAAAGTCAAATAGGTGGGAAAGCTGTTGAGCTCAGAAGCTA CGTATCGAATCTCACTCAAGTTCTGTTTACTATAGACAATGACTCTACTCTGCACACTCAGTTATGGGTAGATCCTACAGAAGAATTTGTCCACTATAAT CATGTTGGAGACCCTATTGATATTACATTTGGCGTAAAGGAATTAAAGTTCACCTCTTCTTGTGTGTTGCAAGTTTATGGTCCCGATTACTGTTTTAGAG AAAGATCTGCTACTATGACTTCAAGGCCGATTTTAATGGCACCAAAATTTGTCCTATCTGATGCATCTGGTTCAAACTTTGACGCGACACTTGTTCTATC AACCATGCTTATATCACAGCTTCATGACGATAACGCCTCTGAAGTAGCACCACAAGCTGACCCAATACCAGCTCAAGCTGTAAACCGTGACCAGTTTCAA GCACAACCAGAAAGTAGTCATAGAGCAAATGTTTCTGAGCATCCATCCGATCACACCAAAATCTGGTCCGACCTTTCAGCAAAAAGTGGTTCTGGTGCTG AAGGTAGAAAAGCTCCAGGAGAAACAAATTTAAATGCCACGGACCAGAGGCAAATTCAGAGGATCGGCACCATTCAGATATCAGAAAATGTGAACGCTGG AGTTTCTGATCCTTCGAGGTATCATCAGAAAGAGAAGGGCCTTCCTGAAGAAGCACAAGATACACCTCAAGCCAATGACACTACGATCTCGCAACGCCAT CCGAGTAATTGGGTAGATGCAACTGAGGAGGATGATGACGATGATCCAGATGAAAACGAAATGTGCATCTAG
AA sequence Show only first row Show all	>Lus10029894 pacid=23159682 polypeptide=Lus10029894 locus=Lus10029894.g ID=Lus10029894.BGIv1.0 annot-version=v1.0 MEFSLSGNALKAFARCITFLGRIGNELAVEASSSSQVYTVFGTPVKFSVLVKAVCSVLRTPVQSIDHLIVQLADPDASKVQWTLECNNGMRKAYSITCNA EPDIQHLALDRSRFPSSFIVRPRDLNRLLANFQSSLQEITIIATEINSLPSDAESQIGGKAVELRSYVSNLTQVLFTIDNDSTLHTQLWVDPTEEFVHYN HVGDPIDITFGVKELKFTSSCVLQVYGPDYCFRERSATMTSRPILMAPKFVLSDASGSNFDATLVLSTMLISQLHDDNASEVAPQADPIPAQAVNRDQFQ AQPESSHRANVSEHPSDHTKIWSDLSAKSGSGAEGRKAPGETNLNATDQRQIQRIGTIQISENVNAGVSDPSRYHQKEKGLPEEAQDTPQANDTTISQRH PSNWVDATEEDDDDDPDENEMCI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05480		ATRAD9	cell cycle checkpoint control ...		Lus10029894 [exp]	0	1
AT4G18210		ATPUP10	purine permease 10 (.1)		Lus10042835 [exp]	1.4	0.9038
AT3G48540			Cytidine/deoxycytidylate deami...		Lus10016755 [exp]	7.7	0.8112
					Lus10001722 [exp]	12.0	0.8304
AT3G17030			Nucleic acid-binding proteins ...		Lus10037764 [exp]	12.8	0.8865
AT2G01120		ORC4, ATORC4	origin recognition complex sub...		Lus10013481 [exp]	14.1	0.8777
AT1G79890			RAD3-like DNA-binding helicase...		Lus10037548 [exp]	14.2	0.8812
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10003268 [exp]	16.7	0.8591
AT3G63480			ATP binding microtubule motor ...		Lus10035344 [exp]	17.6	0.8777
AT4G08630			unknown protein		Lus10001720 [exp]	18.2	0.8272
AT5G64630		MUB3.9, NFB1, N...	FASCIATA 2, Transducin/WD40 re...		Lus10033489 [exp]	18.3	0.8654

Compare expression of checked genes

Lus10029894 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.