Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09090 1107 / 0 ATRBOHB-BETA, ATRBOHB respiratory burst oxidase homolog B (.1.2) AT5G47910 1093 / 0 ATRBOHD, RBOHD respiratory burst oxidase homologue D (.1) AT5G51060 1070 / 0 ATRBOHC, RHD2 ROOT HAIR DEFECTIVE 2, A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C, NADPH/respiratory burst oxidase protein D (.1) AT4G25090 966 / 0 Riboflavin synthase-like superfamily protein (.1.2) AT5G07390 952 / 0 ATRBOHA respiratory burst oxidase homolog A (.1.2) AT1G64060 944 / 0 RBOHAP108, ATRBOHF ,ATRBOH F ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) AT4G11230 818 / 0 Riboflavin synthase-like superfamily protein (.1) AT1G19230 818 / 0 Riboflavin synthase-like superfamily protein (.1.2) AT5G60010 778 / 0 ferric reductase-like transmembrane component family protein (.1) AT3G45810 732 / 0 ferric reductase-like transmembrane component family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020644 [exp] 1384 / 0 AT1G09090 1085 / 0.0 respiratory burst oxidase homolog B (.1.2) Lus10022434 [exp] 1125 / 0 AT5G51060 1276 / 0.0 ROOT HAIR DEFECTIVE 2, A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C, NADPH/respiratory burst oxidase protein D (.1) Lus10043017 [exp] 1117 / 0 AT5G47910 1276 / 0.0 respiratory burst oxidase homologue D (.1) Lus10032517 [exp] 1102 / 0 AT5G47910 1273 / 0.0 respiratory burst oxidase homologue D (.1) Lus10032308 [exp] 949 / 0 AT1G64060 1467 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Lus10017527 [exp] 921 / 0 AT1G64060 1445 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Lus10028755 [exp] 912 / 0 AT1G64060 1486 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Lus10033423 [exp] 859 / 0 AT1G19230 1165 / 0.0 Riboflavin synthase-like superfamily protein (.1.2) Lus10034890 [exp] 851 / 0 AT1G19230 1181 / 0.0 Riboflavin synthase-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G026200 [exp] 1335 / 0 AT1G09090 1165 / 0.0 respiratory burst oxidase homolog B (.1.2) Potri.003G159800 [exp] 1159 / 0 AT5G47910 1299 / 0.0 respiratory burst oxidase homologue D (.1) Potri.015G109800 [exp] 1136 / 0 AT5G51060 1253 / 0.0 ROOT HAIR DEFECTIVE 2, A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C, NADPH/respiratory burst oxidase protein D (.1) Potri.012G111600 [exp] 1133 / 0 AT5G51060 1255 / 0.0 ROOT HAIR DEFECTIVE 2, A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C, NADPH/respiratory burst oxidase protein D (.1) Potri.001G070900 [exp] 1113 / 0 AT5G47910 1227 / 0.0 respiratory burst oxidase homologue D (.1) Potri.003G133300 [exp] 977 / 0 AT1G64060 1489 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Potri.001G098300 [exp] 960 / 0 AT1G64060 1476 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Potri.006G137300 [exp] 863 / 0 AT1G19230 1203 / 0.0 Riboflavin synthase-like superfamily protein (.1.2) Potri.006G097200 [exp] 779 / 0 AT5G60010 1078 / 0.0 ferric reductase-like transmembrane component family protein (.1) Potri.016G112200 [exp] 744 / 0 AT5G60010 1052 / 0.0 ferric reductase-like transmembrane component family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0076 [flax] [poplar] FAD_Lum_binding PF08022 [flax] [poplar] FAD_binding_8 FAD-binding domain CL0220 [flax] [poplar] EF_hand PF08414 [flax] [poplar] NADPH_Ox Respiratory burst NADPH oxidase CL0091 [flax] [poplar] NAD_Ferredoxin PF08030 [flax] [poplar] NAD_binding_6 Ferric reductase NAD binding domain CL0328 [flax] [poplar] 2heme_cytochrom PF01794 [flax] [poplar] Ferric_reduct Ferric reductase like transmembrane component
Representative CDS sequence Show only first row Show all	>Lus10029896 pacid=23159670 polypeptide=Lus10029896 locus=Lus10029896.g ID=Lus10029896.BGIv1.0 annot-version=v1.0 ATGGAGATGCACCCGGCAGACGAAAATCGGCCCGACCCTGGTTCTAGGGTCCCGTATAGTGGCCCGATGAGCGGGCCACTGAGCGGGCCGCTGGTGGCGA CCACGAAGAAGGCGAAGAAGAGTGCAAGGTTCAAGGACCAGCAAGAGGAGGAGTATGTTGAGATTACGCTTGATATTCGAGACGATGCAGTTTCGGTCCA GAACATTAAGGGCGCTGGTGGAGGCGAGATGCAGGAGACGGCGTTGCTACCGGGCCGGCGGTCTGGATCGCTCGGGTCCCATCTCTCGTTCCGTGTCCGG CAAGTGTCACAGGAGCTGAAGCGGATGGCTTCGAGTTCGTCGAAGGCCGCGTTTGAGAAAGTTGACCGGAACAAGTCCGGAGCCGCCAGGGCGTTGAAGG GGCTGAAGTTCATGTCCAAGAACGTCGGAAGTGGCGGCTGGTCGGACGTTGAGAAGCGGTTTGATGAGCTGGCGATTGACGGCGCGTTGCCCAAGACCAG ATTCGCCCAATGCATTGGGATGAAGGAATCGGGAGAGTTCGCCGGCGAACTGTTCGATGCGCTGGCACGGCGGAATGGGATGACGTCGGCGATCATAAGC AAGGCGGATTTGCATGAATTCTGGGAGCAAATAAATGACAAGAGCTTTGATGCTAGGCTACAGATTTTCTTTGACATGGTGGACAAAAATGCGGATGGTC GAATAACGAAAGAGGAGGTTAAAGAGATTATTGCTCTTAGTGCTTCTGCTAATAAGTTATCCAAGATCCAAGACAGAGCTGAAGAGTATGCAGCTTTGAT CATGGAAGAACTGGACCCTGACAACTTGGGCTACATCGAGTTGTACAACTTGGAGACACTGCTCCTACAAGCACCAAGCAAATCAACCAACTTGGGAACG GAAAGCCGAGCCCTGAGCCAAATGCTGAGCCAGAAGCTGGTTCGAACCAAAGAATTCAACCCGATCAGGCGGTGGTCGCACGGGGTGGCCTACTTCGTCC AGGACAACTGGAAGAGGATATGGGTCATGGCATTGTGGCTGGCCATATGCGCAGGGCTGTTCACGTGGAAGTTCGTCCAGTACAAGCGACGCGCTGTATT CGAAGTCATGGGATACTGTGTCTCGGTGGCGAAAGGCGGGGCCGAGCTCACCAAGTTCAACATGGCTTTGATCCTCCTGCCTGTTTGTAGGAACACTATA ACGTGGCTTAGGAGTCGGACCAAGCTGGGGAAGGCCGTACCGTTTGATGACAACATCAATTTTCACAAGGTAGTAGCTGCCGGAATTGCAGTCGGAGTAG GCCTCCACGCGATCTCACATCTGACCTGCGACTTCCCACGGCTGCTCCACGCCACCGACGAGGAGTACAGGCCGCTGGCCCCATTCTTCGGCGAGGAAAG GCCGAACAACTACTGGTGGTTCGTGAAAGGAACCGAAGGCTGGACGGGGGTCCTGATGGTGGTGCTCATGGCTATAGCCTACGTTCTGGCTCAGCCGTGG TTTCGCCGTAACCGTCTCAGGAACCTTCCGAAACCGTTAAAGAAGTTGACCGGGTTCAACGCGTTCTGGTACTCGCACCACTTGTTCGTCATCGTCTATG CTCTGTTTATCGTTCATGGGTACTACTTGTACCTCTCCAAGGACTGGTACAAGAAAACGACGTGGATGTACGTTGCGGTTCCGATGGTGTTGTATGTTTG TGAACGACTCGTTCGTGCTTTCAGATCGGGTTATAAATCAGTCAAGATTCTCAAGGTGGCAGTGTACCCTGGAAATGTACTGTCTCTACAAATGGCGAAG CCTCCAGGATTCCGATACAATAGCGGTCAATACCTGTTTGTGCATTGTGCAGCGGTTTCACCGTTCGAGTGGCATCCATTCTCGATCACTTCCGCTCCAG GAGACGACTACCTCAGTGTCCACATCCGTACCTTGGGAGATTGGACCGGACAGCTCAAATCCGTATTTGCTAAGGTATGTCAACCACCATCAGGAAACCA AAGCGGCCTCCTGAGATCCGACGTCTCAAGCTCTATGCCTAAGCTTCAAATCGACGGACCATATGGAGCTCCGGCACAGGACTACAAGGACTACGACGTC CTTCTCCTAGTCGGATTAGGAATCGGAGCCACTCCTCTTATCAGCATCGTCAAGGACGTCCTTAACAACATCAAGCAGGAGAAGGACCGCCAGCTGGAAT CCGGCGGCGGGGGTGGAAGGCCGTCGTTCACGACGCAGAGAGCTTACTTCTACTGGGTGACGAGGGAGCAAGGATCGTTCGAGTGGTTCCGAGGGGTGAT GAACGAGGTGGCGGAGTATGACGAGGACAAGGTGATCGAGCTTTACAACTACTGTACGAGTGTCTACGAGGAAGGCGACGCCCGATCGGCGTTGATCACG ATGCTCCAGTCGATCCAGCACGCCAAGAGCGGGGTCGATATCGTGTCGGAGACGAGGGTAAAGACCCATTTTGCTAGGCCCGACTGGAGGAAGGTCTTCA AGCTTATCGCTGTTAACCACCCGAACCAAAGAATTGGTGTGTTTTATTGTGGGGCTCCAGGATTGACTGTAGAATTGAGGAAATGGGCTCAAGAATTTTC AAGGAAGACTTCTACCAAGTTTGATTTCCATAAGGAGAATTTTTAA
AA sequence Show only first row Show all	>Lus10029896 pacid=23159670 polypeptide=Lus10029896 locus=Lus10029896.g ID=Lus10029896.BGIv1.0 annot-version=v1.0 MEMHPADENRPDPGSRVPYSGPMSGPLSGPLVATTKKAKKSARFKDQQEEEYVEITLDIRDDAVSVQNIKGAGGGEMQETALLPGRRSGSLGSHLSFRVR QVSQELKRMASSSSKAAFEKVDRNKSGAARALKGLKFMSKNVGSGGWSDVEKRFDELAIDGALPKTRFAQCIGMKESGEFAGELFDALARRNGMTSAIIS KADLHEFWEQINDKSFDARLQIFFDMVDKNADGRITKEEVKEIIALSASANKLSKIQDRAEEYAALIMEELDPDNLGYIELYNLETLLLQAPSKSTNLGT ESRALSQMLSQKLVRTKEFNPIRRWSHGVAYFVQDNWKRIWVMALWLAICAGLFTWKFVQYKRRAVFEVMGYCVSVAKGGAELTKFNMALILLPVCRNTI TWLRSRTKLGKAVPFDDNINFHKVVAAGIAVGVGLHAISHLTCDFPRLLHATDEEYRPLAPFFGEERPNNYWWFVKGTEGWTGVLMVVLMAIAYVLAQPW FRRNRLRNLPKPLKKLTGFNAFWYSHHLFVIVYALFIVHGYYLYLSKDWYKKTTWMYVAVPMVLYVCERLVRAFRSGYKSVKILKVAVYPGNVLSLQMAK PPGFRYNSGQYLFVHCAAVSPFEWHPFSITSAPGDDYLSVHIRTLGDWTGQLKSVFAKVCQPPSGNQSGLLRSDVSSSMPKLQIDGPYGAPAQDYKDYDV LLLVGLGIGATPLISIVKDVLNNIKQEKDRQLESGGGGGRPSFTTQRAYFYWVTREQGSFEWFRGVMNEVAEYDEDKVIELYNYCTSVYEEGDARSALIT MLQSIQHAKSGVDIVSETRVKTHFARPDWRKVFKLIAVNHPNQRIGVFYCGAPGLTVELRKWAQEFSRKTSTKFDFHKENF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09090		ATRBOHB-BETA, A...	respiratory burst oxidase homo...		Lus10029896 [exp]	0	1
AT1G14590			Nucleotide-diphospho-sugar tra...		Lus10017981 [exp]	1.4	0.9917
AT2G35980		NHL10, YLS9, AT...	YELLOW-LEAF-SPECIFIC GENE 9, A...		Lus10016962 [exp]	2.8	0.9903
AT1G09090		ATRBOHB-BETA, A...	respiratory burst oxidase homo...		Lus10020644 [exp]	3.9	0.9899
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10022303 [exp]	4.9	0.9842
AT2G02010		GAD4	glutamate decarboxylase 4 (.1)		Lus10034426 [exp]	6.0	0.9880
AT5G17330		GAD1, GAD	GLUTAMATE DECARBOXYLASE 1, glu...		Lus10034425 [exp]	7.5	0.9842
AT5G39160			RmlC-like cupins superfamily p...		Lus10032015 [exp]	8.9	0.9849
					Lus10019232 [exp]	9.5	0.9794
					Lus10009731 [exp]	10.5	0.9710
AT3G46510		ATPUB13	ARABIDOPSIS THALIANA PLANT U-B...		Lus10007511 [exp]	13.0	0.9799

Compare expression of checked genes

Lus10029896 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.