Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05470 543 / 0 Actin-binding FH2 (formin homology 2) family protein (.1) AT5G67470 383 / 1e-119 ATFH6 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) AT3G25500 376 / 9e-116 AHF1, AFH1, ATFH1 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) AT5G54650 358 / 1e-110 ATFH5, Fh5 FORMIN HOMOLOGY 5, formin homology5 (.1.2) AT2G43800 346 / 6e-106 Actin-binding FH2 (formin homology 2) family protein (.1) AT4G15200 306 / 3e-92 AFH3 formin 3 (.1.2) AT1G70140 292 / 6e-87 ATFH8 formin 8 (.1) AT1G59910 263 / 2e-75 Actin-binding FH2 (formin homology 2) family protein (.1) AT5G48360 224 / 3e-62 Actin-binding FH2 (formin homology 2) family protein (.1) AT1G24150 221 / 2e-61 ATFH4, FH4 formin homologue 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004505 [exp] 1227 / 0 AT3G05470 628 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10015175 [exp] 663 / 0 AT3G05470 635 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10031496 [exp] 651 / 0 AT3G05470 608 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10008739 [exp] 389 / 4e-120 AT5G67470 711 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10002149 [exp] 386 / 3e-119 AT3G25500 717 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Lus10019298 [exp] 377 / 7e-117 AT5G67470 826 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10011524 [exp] 376 / 2e-116 AT5G67470 818 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10025195 [exp] 370 / 2e-114 AT5G67470 642 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10011168 [exp] 339 / 5e-103 AT5G54650 640 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G017900 [exp] 598 / 0 AT3G05470 648 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Potri.005G026300 [exp] 586 / 0 AT3G05470 652 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Potri.007G054900 [exp] 390 / 2e-122 AT5G67470 684 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Potri.007G140200 [exp] 383 / 2e-119 AT3G25500 654 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.002G240232 [exp] 385 / 9e-119 AT3G25500 610 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.014G174700 [exp] 385 / 1e-118 AT3G25500 673 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.017G009900 [exp] 375 / 3e-116 AT3G25500 631 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.001G416100 [exp] 356 / 4e-109 AT5G54650 623 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Potri.007G119900 [exp] 352 / 2e-108 AT5G54650 578 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Potri.011G131700 [exp] 354 / 3e-108 AT5G54650 590 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02181 [flax] [poplar] FH2 Formin Homology 2 Domain
Representative CDS sequence Show only first row Show all	>Lus10029897 pacid=23159848 polypeptide=Lus10029897 locus=Lus10029897.g ID=Lus10029897.BGIv1.0 annot-version=v1.0 ATGGCTTCTTCTTCTTCTTCTTGTTCCCACATTCTCTTGTTAATAATCATTTTGATGCTTATCTCATCATTGCAAAACCCCCACAGTTCTTTAGCTGCTG CAAAAGATGAGACTGGAAAAGGAGGGCAAAAAACTGTGATAGTACTGCAAAAGTTGAGAGCTTTACTTGGGATTCCATGGATTCACCATTCTCCACATTA TCCCATTTCAGCAAACTTGGCTCCTGCTCCTGCTCCAGCTCCCATGGTGTCATTTCGACCGCATTCTCGTCCTCCTCCTCTGCAGCATCACCATCAGAGG AAGCCGATTCCTGTACTGCAAATCGAAGAGAGAGCCGGAAACAACAACGACAAAGGGAGATTCAGAAGGGTTCTAGTGGCAGTCATTGTGTCTTCTGGTG TTGCTGCATTGGTTATTGCTGCACTTGTGCTTACTTGGGCCTTCTCTGGCAAGTTTAGGAAGCAGAATCAAAGGGAATCCGTAGGAACAATGCCGGTGAT TCGAGGTAAGAAATGGAGGAAGGCCAGAGGTAATAAATCCAAGTATGTAGCTTCCAAGGTGAGCTTAAACCCTGGCCGAGATTTCTTGTATCTGAATTCG TTATGTCGAGACTCGGAGCTAGAAGAAGCTCCGTGTCGAAAACACGCTACTGAGGTAGTACTCAAACCACCACACTACTCGCCGAATTGCGTGTTGGCAG AAAGTGTTAGTAGTTCTTCTTCCACCAGGGACATCACTTCTGTCCATGGATGTGATGAATCTGATGGAGAAAACTCTTGTGTTATTGGGGATAAACCTGT TCGAATCGAGTGCCATTCATCGGATGATGAATCGTTCCATTCTTTTGCTGGCTCACATTCATCAAGCATCAGGCTTTCCAATGCTTCAGCTTGTAGTCCA CTAAATGAGCCTAATGTTGCGAGCTTCGCAATCGGACCACCGCCACCTCCACCACCTCCTCCACCTCCACGTTTGCCTCGGATATCTGCTCCGAGCGAGT CCTTGTGGCGTTCGAAGAGGATTACATCCACATTTCCAGATCTTACATCTCCAAGAGGAAAAAGTTTACCTCTTTCACCTCAGAAATCTGTATCTGGAAC TGGAATTCCTCAGCCGCCTTGTCCTCCTCCATTTATGAAGGCTCCTCCACCTCCTCCGCCATCTTCTTACACGCCGTTGGGGAAAGATGGGACGCCATTG CCTAAACTGAAGCCTCTTCATTGGGATAAAGTGAGAGCACCACCAGATCAAAGAATGGTATGGGACAAGATTAGATCAAGCTCATTTGAGTTAGATGAAG AGATGATCGAGTCACTTTTCGGATATAACATGAGCAGCGCAACGAAAATGGACGATACGAACATATGCAAAACCCCATCTCCAACAAGCAAGCATGTGTT GGATCCCAAAAGACTTCAAAACATCACCATTCTGTCAAAAGCTCTGAACTCCACTGCTGATCAAGTCTGTGATTCACTAATGAGAGGGGAGGGTCTCTGC TTGCAGCAGCTAGAAGCTCTGGTGAGGATGGCGCTAACCAACGAAGAACAGTCGAAACTCTGCGAATATAAGGGCAATGTAAACGAATTAGGTTCGGCTG AGATATTCGTCAAGACATTGCTCGCTGTACCATTCGCATTCGATAGAGTCGAAGCAATGCTCTTCAGAGAAACCTTCAATGACGAAGTTGTTCATCTCAG AAACTCCTTCTCAATGCTTGAGGAAGCATGCAAAGAGCTCAGATCAAGCAGACTATTCCTAAAGCTACTGGAAACAGTACTCAAAACAGGCAACCGAATG AACGTTGGAACGATCCGAGGAGACGCACGAGCATTCAAACTCGACGCCCTGCTCAAACTCTCCGACGTTAAAGGCACTGACGGGAAAACAACTCTGTTTC ATTTCGTCGTTCAGGAAATTAGTCGAACCGAAGGCGTACGTGTTTCGGACAGCATAATCGGAACAACAATCAAAAACTCCAAACCGATAAGAACCGCCGA GGAAAATGAAGAGAATTACCGTCGATTAGGGCTAGACCTCGTCTCGGGGCTAAGCAACGAGCTTTACAACGTCAAGAAGACCGCAACAGTCGACCTGGAC GTCCTTGCGAACTCCGTGTCGAATCTCTCGTCCGGGGTCGCGAAGGCGAACCGCCTGATCATTCGTGATCAGCTCTGTTGTGGAGGAGAGTTGTTCGTCG GATCGATGAAGGGGTTCCTGCTGCGTGCAGAGGCGGAACTGAAGGAAGTGGAAGAGGAAGAAGATAGAGTGATGTCGATGGTTCGAGAAGTTACCGAGTA CTTCCATGGCAATGGAGGGAAAGACGAAGCGAATCCGTTGAGGATTTTCGTGATCGTGAGGGATTTCTTGGGGATGCTTGACCATGTCTGTAAAGAACTG AGGAGCTCCAAGTCGTCCTGGAGCTCGAATCCGTTTCGGTAG
AA sequence Show only first row Show all	>Lus10029897 pacid=23159848 polypeptide=Lus10029897 locus=Lus10029897.g ID=Lus10029897.BGIv1.0 annot-version=v1.0 MASSSSSCSHILLLIIILMLISSLQNPHSSLAAAKDETGKGGQKTVIVLQKLRALLGIPWIHHSPHYPISANLAPAPAPAPMVSFRPHSRPPPLQHHHQR KPIPVLQIEERAGNNNDKGRFRRVLVAVIVSSGVAALVIAALVLTWAFSGKFRKQNQRESVGTMPVIRGKKWRKARGNKSKYVASKVSLNPGRDFLYLNS LCRDSELEEAPCRKHATEVVLKPPHYSPNCVLAESVSSSSSTRDITSVHGCDESDGENSCVIGDKPVRIECHSSDDESFHSFAGSHSSSIRLSNASACSP LNEPNVASFAIGPPPPPPPPPPPRLPRISAPSESLWRSKRITSTFPDLTSPRGKSLPLSPQKSVSGTGIPQPPCPPPFMKAPPPPPPSSYTPLGKDGTPL PKLKPLHWDKVRAPPDQRMVWDKIRSSSFELDEEMIESLFGYNMSSATKMDDTNICKTPSPTSKHVLDPKRLQNITILSKALNSTADQVCDSLMRGEGLC LQQLEALVRMALTNEEQSKLCEYKGNVNELGSAEIFVKTLLAVPFAFDRVEAMLFRETFNDEVVHLRNSFSMLEEACKELRSSRLFLKLLETVLKTGNRM NVGTIRGDARAFKLDALLKLSDVKGTDGKTTLFHFVVQEISRTEGVRVSDSIIGTTIKNSKPIRTAEENEENYRRLGLDLVSGLSNELYNVKKTATVDLD VLANSVSNLSSGVAKANRLIIRDQLCCGGELFVGSMKGFLLRAEAELKEVEEEEDRVMSMVREVTEYFHGNGGKDEANPLRIFVIVRDFLGMLDHVCKEL RSSKSSWSSNPFR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05470			Actin-binding FH2 (formin homo...		Lus10029897 [exp]	0	1
AT1G67590			Remorin family protein (.1.2)		Lus10036997 [exp]	1.7	0.9008
AT2G45260			Plant protein of unknown funct...		Lus10009923 [exp]	3.5	0.9148
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Lus10019248 [exp]	3.7	0.9152
AT5G27220			Frigida-like protein (.1)		Lus10033831 [exp]	7.6	0.8674
AT5G59010			Protein kinase protein with te...		Lus10040719 [exp]	7.7	0.8824
AT4G34160		CYCD3;1	CYCLIN D3;1 (.1)		Lus10024796 [exp]	8.1	0.8808
AT3G03770			Leucine-rich repeat protein ki...		Lus10033407 [exp]	12.8	0.8616
AT1G71691			GDSL-like Lipase/Acylhydrolase...		Lus10016929 [exp]	13.4	0.8442
AT1G53470		MSL4	mechanosensitive channel of sm...		Lus10038148 [exp]	14.4	0.8684
AT5G19730			Pectin lyase-like superfamily ...		Lus10043035 [exp]	15.2	0.8573

Compare expression of checked genes

Lus10029897 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.