Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27680 93 / 6e-22 RECQSIM RECQ helicase SIM (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004503 [exp] 317 / 3e-103 AT5G27680 912 / 0.0 RECQ helicase SIM (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G026400 [exp] 139 / 5e-38 AT5G27680 875 / 0.0 RECQ helicase SIM (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029898 pacid=23159780 polypeptide=Lus10029898 locus=Lus10029898.g ID=Lus10029898.BGIv1.0 annot-version=v1.0 ATGGCCGGAAGTAGTATAGCCTTAACTTTCGATGGCGCGATTGAAAAGCTGGTTGAGATGGGGTTCGAGAAGTCTTCCGCTTTGATGGCGGTGGATCGGG TAGGTCCGTCATTGGACGCCGCCGTTGATTATCTATTGAATGGTGGTAATCGCAAGTCCGGCGGTGCTTCGAGTAGTTCGAGAAGCTTTACTAGTAGTGC GAAGGTTCTTGGTAAAAGAGCTGCAGTAACTTCCTCTGGTTTGGGTCCTAAGCGGCAATCCACCATTTTGGATCATTTTGATTCCGCTGGTGGATCCAAG AGGAGTAGAGTTAATAAGGATTTAGTTCAGGCAGAGCCTCATTCGAGGATTGAGGTATCGTGCTCAGGTGCATTTGATAACTACCAGAAGGAAAATACGG AAGAGCATTTGCCAGTTTTATGTTCTAGAGAGGTTGTAGATGTTGGTGGAGATTGGGAGGGGAGAGCTAACATCATATTGCGAAAGCATTTCGGTTATCA ATCATTGAAGAGTTTTCGGAAGGAAGCTTTGGCGGCGTGGGTTGCTAACCAGGACTGTCTCATCCTTGCCGCAACTGGATCCGATAAATTATGCTCTTAA
AA sequence Show only first row Show all	>Lus10029898 pacid=23159780 polypeptide=Lus10029898 locus=Lus10029898.g ID=Lus10029898.BGIv1.0 annot-version=v1.0 MAGSSIALTFDGAIEKLVEMGFEKSSALMAVDRVGPSLDAAVDYLLNGGNRKSGGASSSSRSFTSSAKVLGKRAAVTSSGLGPKRQSTILDHFDSAGGSK RSRVNKDLVQAEPHSRIEVSCSGAFDNYQKENTEEHLPVLCSREVVDVGGDWEGRANIILRKHFGYQSLKSFRKEALAAWVANQDCLILAATGSDKLCS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27680		RECQSIM	RECQ helicase SIM (.1)		Lus10029898 [exp]	0	1
AT3G22470			Pentatricopeptide repeat (PPR)...		Lus10003426 [exp]	20.1	0.6253
AT1G67070		PMI2, DIN9	PHOSPHOMANNOSE ISOMERASE 2, DA...		Lus10009165 [exp]	45.8	0.5995
AT1G65810			P-loop containing nucleoside t...		Lus10035774 [exp]	52.7	0.5719
AT3G10910			RING/U-box superfamily protein...		Lus10033425 [exp]	92.2	0.5289
AT1G77170			Tetratricopeptide repeat (TPR)...		Lus10029884 [exp]	112.5	0.5356
AT3G57430		OTP84	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10005431 [exp]	171.6	0.4921

Compare expression of checked genes

Lus10029898 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.