Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62770 463 / 3e-162 ATATG18A autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) AT3G56440 397 / 6e-137 ATATG18D homolog of yeast autophagy 18 (ATG18) D (.1) AT2G40810 392 / 1e-134 ATATG18C homolog of yeast autophagy 18C (.1.2) AT5G05150 300 / 9e-99 ATATG18E ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18E, autophagy-related gene 18E (.1) AT4G30510 101 / 2e-24 ATATG18B ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) B, homolog of yeast autophagy 18 (ATG18) B (.1), homolog of yeast autophagy 18 (ATG18) B (.2) AT1G54710 49 / 6e-06 ATATG18H homolog of yeast autophagy 18 (ATG18) H (.1) AT1G03380 49 / 6e-06 ATATG18G homolog of yeast autophagy 18 (ATG18) G (.1) AT5G54730 49 / 7e-06 ATATG18F ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) F, homolog of yeast autophagy 18 (ATG18) F (.1) AT2G22040 42 / 0.0006 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004501 [exp] 689 / 0 AT3G62770 493 / 5e-174 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Lus10031500 [exp] 557 / 0 AT3G62770 493 / 1e-173 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Lus10015178 [exp] 547 / 0 AT3G62770 489 / 4e-172 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Lus10041353 [exp] 465 / 6e-163 AT3G62770 608 / 0.0 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Lus10036577 [exp] 464 / 3e-162 AT3G62770 610 / 0.0 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Lus10003694 [exp] 368 / 3e-125 AT2G40810 580 / 0.0 homolog of yeast autophagy 18C (.1.2) Lus10001580 [exp] 366 / 5e-124 AT2G40810 577 / 0.0 homolog of yeast autophagy 18C (.1.2) Lus10036618 [exp] 58 / 1e-08 AT5G54730 511 / 3e-170 ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) F, homolog of yeast autophagy 18 (ATG18) F (.1) Lus10035835 [exp] 57 / 2e-08 AT5G54730 521 / 1e-174 ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) F, homolog of yeast autophagy 18 (ATG18) F (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G018400 [exp] 499 / 4e-177 AT3G62770 496 / 6e-176 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Potri.005G026600 [exp] 483 / 1e-170 AT3G62770 491 / 7e-174 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Potri.002G207865 [exp] 464 / 1e-162 AT3G62770 596 / 0.0 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Potri.014G132300 [exp] 461 / 3e-161 AT3G62770 565 / 0.0 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Potri.019G062800 [exp] 389 / 2e-133 AT2G40810 609 / 0.0 homolog of yeast autophagy 18C (.1.2) Potri.018G101200 [exp] 122 / 6e-31 AT4G30510 432 / 2e-152 ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) B, homolog of yeast autophagy 18 (ATG18) B (.1), homolog of yeast autophagy 18 (ATG18) B (.2) Potri.011G132700 [exp] 56 / 3e-08 AT5G54730 510 / 8e-169 ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) F, homolog of yeast autophagy 18 (ATG18) F (.1) Potri.001G417000 [exp] 56 / 6e-08 AT5G54730 501 / 2e-165 ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) F, homolog of yeast autophagy 18 (ATG18) F (.1) Potri.013G028200 [exp] 47 / 2e-05 AT1G54710 867 / 0.0 homolog of yeast autophagy 18 (ATG18) H (.1) Potri.005G040300 [exp] 47 / 2e-05 AT1G54710 861 / 0.0 homolog of yeast autophagy 18 (ATG18) H (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10029900 pacid=23159875 polypeptide=Lus10029900 locus=Lus10029900.g ID=Lus10029900.BGIv1.0 annot-version=v1.0 ATGTCCAGCCCTTACCCTCCCACTTACACCTCCTCCTGCTCCTCTACTTCCTCCTCCACCACCTTCTACTCCATCCCACCCGACTCCGATTCCGTCTCCG ACGATTCCTCCTCCATCTCCTCCTCCGCAGCAGTCGTCGAGGAACCCGCCTCCTCCGGCCAGAACCCTTCAGTCTACCACCTCTCCTTCAACCAGGACTA CAGCTGCTTCGTCGCGGGGCTCGACAGCGGCTTCCGTATCTACAACACCGGGCCCTTCAAGCCCTTGTTCCGCCGTGAGACGACGGAGTCTCCATCACGC GGCGGCGGAATCGGAATTGTTGCGATGCTCTTCCGCTGCAACATACTCTGCTTCGTCGGCGGCGGCCCCGACCCTATCTACCCTCCGAACAAAGTAATGC TATGGGACGACAACCTGTCCAGGTGCTTTGGAGAGCTCACGTTCCGATCGGAGGTGAAGAACGTGAAAATCCGCCGCGATAGGATCGTCGTCGTTCTGCT CCAGGAGATCTTCGTCTACAATTTCGCCGACCTGAGGCTGGTGGATCAGATTGAGACGGCGATGAACAGTAAATCACTGTGTGAGGTCTCGCATACTTCG TCGCCGATGGTGTTGGCGTGTCCTGGATTGCAGAAGGGGCAAATTAGGGTTGAGGATTACGGCTCGAAGCTGACCAAGTTCGTAATGGCGCATGATTCAA GGCTTGCTTGTATGTGCATGACACAAGACGGGAGGTTGCTAGCTACTGCGAGCAGTAAAGGAACTCTGATTCGAGTTTTCAATACACTGGATGGTTCATT GCTTCGGGAGGTCAGGCGAGGAGCAGACAGAGCGGATATCTACAGCCTTGCATTCTCCTCTGATGCTCACTGGCTCGGCGTCTCGAGCGATAAGGGAACC ATCCATGTCTTCAGCCTCAAGGCCGATTCATTAGCAACACTGTCGAACCAAAGATCGCTCGTTGCTCCTACTTTGAATCCCTCCAGCGGGTTGGGGGTTT CATCTCTTTCTATCTTGAAAGGTGTGTTACCAAAGTACTTCAGCTCAGAATGGTCGGTGGCTCAGTTCCGATTGCCTGAAGGCTCTCATCAGTACTTTGT TGGGTTTGGTCTGCAGAAGAACACTGTGGTCGTCATTGGACTCAATGGAAGCTTTTATAGGTGTGAGTTTGATCCTGTAAGAGGAGGAGATATGAAGCAG CTTGAACACCATAGTTTCCTTAGTGCAGATAATTTTCTTAGTGCAAACAATTTCCTGAAAGGAAAATAA
AA sequence Show only first row Show all	>Lus10029900 pacid=23159875 polypeptide=Lus10029900 locus=Lus10029900.g ID=Lus10029900.BGIv1.0 annot-version=v1.0 MSSPYPPTYTSSCSSTSSSTTFYSIPPDSDSVSDDSSSISSSAAVVEEPASSGQNPSVYHLSFNQDYSCFVAGLDSGFRIYNTGPFKPLFRRETTESPSR GGGIGIVAMLFRCNILCFVGGGPDPIYPPNKVMLWDDNLSRCFGELTFRSEVKNVKIRRDRIVVVLLQEIFVYNFADLRLVDQIETAMNSKSLCEVSHTS SPMVLACPGLQKGQIRVEDYGSKLTKFVMAHDSRLACMCMTQDGRLLATASSKGTLIRVFNTLDGSLLREVRRGADRADIYSLAFSSDAHWLGVSSDKGT IHVFSLKADSLATLSNQRSLVAPTLNPSSGLGVSSLSILKGVLPKYFSSEWSVAQFRLPEGSHQYFVGFGLQKNTVVVIGLNGSFYRCEFDPVRGGDMKQ LEHHSFLSADNFLSANNFLKGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Lus10029900 [exp]	0	1
AT1G18190		GC2	golgin candidate 2 (.1)		Lus10009060 [exp]	5.1	0.8764
AT2G19480		NFA2, NFA02, NA...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10005551 [exp]	5.7	0.8815
AT1G24110			Peroxidase superfamily protein...		Lus10029201 [exp]	12.4	0.8018
					Lus10034718 [exp]	13.6	0.8525
					Lus10014101 [exp]	15.7	0.8404
AT5G03610			GDSL-like Lipase/Acylhydrolase...		Lus10028145 [exp]	20.5	0.8638
					Lus10015828 [exp]	23.7	0.8607
AT1G49490			Leucine-rich repeat (LRR) fami...		Lus10027935 [exp]	24.8	0.8603
AT3G52520			unknown protein		Lus10004216 [exp]	25.0	0.8467
AT3G12580		ATHSP70, HSP70	ARABIDOPSIS HEAT SHOCK PROTEIN...		Lus10023419 [exp]	26.2	0.8005

Compare expression of checked genes

Lus10029900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.