Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09070 155 / 3e-45 (AT)SRC2, (AT)SRC2, (AT)SRC2, (AT)SRC2, (AT)SRC2, (AT)SRC2, (AT)SRC2, (AT)SRC2, (AT)SRC2, (AT)SRC2, soybean gene regulated by cold-2 (.1) AT3G16510 132 / 5e-36 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT4G15755 123 / 3e-33 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT4G15740 98 / 8e-23 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G62780 83 / 3e-18 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT5G11100 52 / 2e-07 SYT4, NTMCTYPE2.2, ATSYTD ,NTMC2T2.2 ,NTMC2TYPE2.2 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G05440 49 / 3e-07 C2 domain-containing protein (.1) AT3G55470 49 / 5e-07 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT1G63220 46 / 3e-06 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT1G05500 43 / 0.0002 SYT5, NTMCTYPE2.1, ATSYTE ,NTMC2T2.1 ,NTMC2TYPE2.1 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004500 [exp] 311 / 2e-107 AT1G09070 179 / 2e-55 soybean gene regulated by cold-2 (.1) Lus10006523 [exp] 123 / 5e-33 AT3G16510 147 / 1e-41 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10003570 [exp] 60 / 5e-10 AT2G33320 222 / 7e-67 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10002235 [exp] 57 / 6e-10 AT1G63220 216 / 2e-73 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10029565 [exp] 57 / 7e-10 AT1G63220 221 / 1e-75 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10032780 [exp] 59 / 2e-09 AT2G33320 227 / 1e-70 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10014466 [exp] 49 / 3e-06 AT1G04540 245 / 7e-76 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10038117 [exp] 47 / 8e-06 AT1G05500 888 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10008055 [exp] 45 / 4e-05 AT1G05500 775 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G018600 [exp] 183 / 3e-56 AT1G09070 157 / 5e-46 soybean gene regulated by cold-2 (.1) Potri.005G026700 [exp] 167 / 8e-50 AT1G09070 148 / 3e-42 soybean gene regulated by cold-2 (.1) Potri.010G024200 [exp] 153 / 1e-44 AT3G16510 135 / 5e-37 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.008G209800 [exp] 130 / 5e-36 AT3G16510 137 / 8e-38 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.001G070400 [exp] 80 / 8e-17 AT3G16510 82 / 4e-17 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.003G160400 [exp] 76 / 2e-15 AT3G16510 72 / 8e-14 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.013G107175 [exp] 74 / 6e-15 AT3G16510 77 / 1e-15 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.013G048400 [exp] 58 / 2e-09 AT2G33320 211 / 6e-63 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.005G026650 [exp] 55 / 5e-09 AT1G09070 53 / 9e-09 soybean gene regulated by cold-2 (.1) Potri.019G021300 [exp] 55 / 2e-08 AT3G04360 213 / 2e-65 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Lus10029901 pacid=23159805 polypeptide=Lus10029901 locus=Lus10029901.g ID=Lus10029901.BGIv1.0 annot-version=v1.0 ATGGAGTGCAGGCCAATAGAGATCACGATCCAATCCGCCAAGGACCTGAAGAACGTCAACCTCATCTCGAAGATGGACGTTTACGCCGTCGCTTCAATCA AGGGCGATCCCTACAATTCGAAGCAGAAGCACAAGACTCCCGTCGACAAGGACTCCGGACCCAACCCGAAGTGGAACCACCACGTCAGCTTCACCGTCGA CGAGCCTTCCCTCCAGCAGAACCGCCTCACCGTAAAGATCGAGCTCATCTCCGACCGCAGCCTCGGCGATCGGGAGATCGGTGAGGTCAACGTCCCGATC AAGGAGCTCTTCGATGAGAGCAGCAAAGGAGATTCCAAGGCGGAGAAGACCGTCAGCTATGCGGTCAGGACGTCAGGCGGGAAGAGCAAAGGGACGCTGA CGTTCTCGTACAAGTTCGGTGACAAATTCTCCGCTCCGGAGAAGGCGAAGAAGTCGGATCATCAGGTGGCGGCTCCGCCGCCTATGATGGCTTATCCGGC TGGTGCATCCGGGTCGAGCGGTGGATCGGGTTACCCGTACCAACCACCTCCTCAGGGAGCTTATCCTGGACCTCCACCGCAGGCCGGGTATCCTTACCAG TACCCGGCTCCGGGACAAGGTGGGTACCCGCCTCAACAGGCTTACGGAGGGGACCCGCCCCAACAGCGCCCACCCCCCGCCACAACAGCAGGGCTACGGT TGTTACCCGCCTCAACAACAGGGCTACGGTGGTTACCCTCCCCAGCATCAACAGGGGTACGGGTACCCGCCGATGATGGCGGCTCAGAAGCCGCACAAGA GCGGAGGAAGTGGAGGGAAAATGGCGTTGGGAGTCGGAGCCGGGTTGCTGGGCGGGTTGTTGGTTGGTGA
AA sequence Show only first row Show all	>Lus10029901 pacid=23159805 polypeptide=Lus10029901 locus=Lus10029901.g ID=Lus10029901.BGIv1.0 annot-version=v1.0 MECRPIEITIQSAKDLKNVNLISKMDVYAVASIKGDPYNSKQKHKTPVDKDSGPNPKWNHHVSFTVDEPSLQQNRLTVKIELISDRSLGDREIGEVNVPI KELFDESSKGDSKAEKTVSYAVRTSGGKSKGTLTFSYKFGDKFSAPEKAKKSDHQVAAPPPMMAYPAGASGSSGGSGYPYQPPPQGAYPGPPPQAGYPYQ YPAPGQGGYPPQQAYGGDPPQQRPPPATTAGLRLLPASTTGLRWLPSPASTGVRVPADDGGSEAAQERRKWRENGVGSRSRVAGRVVGW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09070		(AT)SRC2, (AT)S...	soybean gene regulated by cold...		Lus10029901 [exp]	0	1
AT1G09070		(AT)SRC2, (AT)S...	soybean gene regulated by cold...		Lus10004500 [exp]	1.4	0.9347
AT1G74450			Protein of unknown function (D...		Lus10042809 [exp]	3.0	0.9212
AT2G40000		ATHSPRO2	ARABIDOPSIS ORTHOLOG OF SUGAR ...		Lus10028275 [exp]	3.2	0.9206
AT1G01550		BPS1	BYPASS 1, Protein of unknown f...		Lus10039581 [exp]	4.2	0.9045
AT4G17230	GRAS	SCL13	SCARECROW-like 13 (.1)		Lus10000539 [exp]	5.1	0.9236
AT2G40000		ATHSPRO2	ARABIDOPSIS ORTHOLOG OF SUGAR ...		Lus10040215 [exp]	6.0	0.9014
AT2G32260		ATCCT1	phosphorylcholine cytidylyltra...		Lus10027337 [exp]	6.3	0.9041
AT1G48040			Protein phosphatase 2C family ...		Lus10037832 [exp]	6.8	0.8670
AT1G18740			Protein of unknown function (D...		Lus10029782 [exp]	8.4	0.8784
AT4G29780			unknown protein		Lus10011946 [exp]	9.4	0.9207

Compare expression of checked genes

Lus10029901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.