Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05420 975 / 0 ACBP4 acyl-CoA binding protein 4 (.1.2) AT5G27630 884 / 0 ACBP5 acyl-CoA binding protein 5 (.1) AT5G04420 433 / 2e-145 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) AT5G18590 221 / 2e-62 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT1G74150 119 / 5e-28 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G18610 117 / 2e-27 Galactose oxidase/kelch repeat superfamily protein (.1) AT2G36360 89 / 2e-18 Galactose oxidase/kelch repeat superfamily protein (.1.2.3.4.5) AT4G04670 89 / 6e-18 Met-10+ like family protein / kelch repeat-containing protein (.1) AT5G48180 77 / 4e-15 NSP5 nitrile specifier protein 5 (.1) AT1G03445 77 / 2e-14 BSU1 BRI1 SUPPRESSOR 1, Serine/threonine protein phosphatase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004499 [exp] 1257 / 0 AT3G05420 1019 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10015176 [exp] 1067 / 0 AT3G05420 1024 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10031497 [exp] 1051 / 0 AT3G05420 1027 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10037933 [exp] 446 / 1e-149 AT5G04420 648 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10038666 [exp] 441 / 2e-148 AT5G04420 655 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10028825 [exp] 420 / 3e-140 AT5G04420 622 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10017457 [exp] 418 / 2e-139 AT5G04420 610 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10034163 [exp] 213 / 5e-60 AT5G18590 785 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10043420 [exp] 191 / 9e-52 AT5G18590 611 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G026900 [exp] 1023 / 0 AT3G05420 1005 / 0.0 acyl-CoA binding protein 4 (.1.2) Potri.013G018800 [exp] 999 / 0 AT3G05420 999 / 0.0 acyl-CoA binding protein 4 (.1.2) Potri.008G031200 [exp] 450 / 6e-152 AT5G04420 655 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Potri.010G230300 [exp] 443 / 2e-149 AT5G04420 657 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Potri.008G214900 [exp] 242 / 3e-70 AT5G18590 819 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.010G022000 [exp] 238 / 1e-68 AT5G18590 811 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.005G013000 [exp] 137 / 6e-34 AT1G18610 172 / 2e-46 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.013G008200 [exp] 129 / 4e-31 AT1G74150 200 / 3e-56 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.015G059400 [exp] 115 / 1e-26 AT1G18610 622 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.012G062100 [exp] 113 / 3e-26 AT1G18610 631 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0632 [flax] [poplar] FERM_M PF00887 [flax] [poplar] ACBP Acyl CoA binding protein CL0186 [flax] [poplar] Beta_propeller PF07646 [flax] [poplar] Kelch_2 Kelch motif
Representative CDS sequence Show only first row Show all	>Lus10029902 pacid=23159720 polypeptide=Lus10029902 locus=Lus10029902.g ID=Lus10029902.BGIv1.0 annot-version=v1.0 ATGTCGATGGCGAGGGCAAGCTCTGGCCTCGCGTATCCGGATCGATTCTTCGCCGCCGCAGCGTACGTTGGATTCGATGGATCTCCCAATTCCACCTCTG CAGTCACCTCCAAGTTCCAGACCGACACCGCCTTGCTCCTCTATGCTTTGTATCAGCAGGCGACTGTTGGACCATGCAACTTATCAAAACCGAGTGCGTG GAATGCTGTGGAGCTAAGCAAGTGGAAAAGCTGGAAGGGCCTTGGGAACATGGCCACCACTGAAGCGATGCGCCTCTTTGTGAAGATATTGGAGGAAGAA GACCCGGGTTGGTATTCTAGAGCATCTAACTTAGTCTCTGAACCTGTTGTAGATATGCCAGTGAATCACAACTCCGAAGCCAATCATGCTGTCGAGAATG GCAATGCTTTGCCCGAGACAAAGACTATAGCTAGTGAAAATGGGACGCACATGGAAACTCTAGACAAAGATGTTGTCTCTGAAGGCTTTGGTTCAGTAGT TGTATATGACCAATGGACCGCACCTCCAGTATCCGGTCAACGTCCTAAATCCCGTTATGAGCATGGGGCAGCAGTTATCGAAGATAAGATGTATATACAT GGCGGAAACCACAACGGGCGCTACCTAAACGATCTTCATGTTTTGGATCTGAGAAGCTGGACTTGGTCAAAGGTTGAAGGAAAAGTTGGAGCTGAGGAGT CTGATTCTGCATCTACATTAGCTCCTTGTGCTGGGCATTCTTTGATACCTTGGGAGAATAAGCTTATATCGATTGCTGGACACACAAAGGATCCTTCTGA GACCATTCAAGTGAAGGGATTCGATTTAAAAACCGGCACATGGTCAATGTTAAAGACTTACGGGAAACCACCAGTCTCGCGTGGAGGACAATCTGTCACC CTATTTGGAACAAGCTTAGTGATCTTTGGTGGAGAAGATGCAAAAAGATCTTTGTTGAATGATCTTCATATTCTTGACCTTGAAACCATGACCTGGGATG AGATCGATGCCATTGGGGGGCCTCCTTCTCCTAGATCGGATCATGCTGCTGCAGTACACGCAGAGCGTTATCTTCTCATCTTTGGTGGAGGCTCGCATGC AACTTGCTTTAACGATCTCCACGTGCTTGACCTGCAAACAATGGAGTGGACTCGACCAGCACAACAGGGCGACATCCCAACTCCACGGGCTGGACATGCA AGTGTGACAGTTGGAGAGAATTGGTTTATTGTTGGTGGGGGTGACAACAAAAGTGGGGCATCTGAAACTGTTGTCCTAAACATGTCCACACTTGTATGGT CTGTTGTTACATCCGTTCAAGGCCGTGTTCCTATAGCCAGTGAGGGTCTGAGTTTGGTTGTGAGATCGTACAACGGTGATGATGTTCTTGTAGCGTTCGG AGGATATAATGGTCGCTATAACAGTGAGGTTAATGTCCTTAAACCGAGTCACAAATCGACACTGCAATCGAAGATCATGGAGAGTCCTGTCCCTGACAGC GTGTCGGCTGTCCACAACGTAACAAATCCGACAAGGGATCTGGATGCGGAGATCGAGCTGAGCCAAGAGAGCAAAATAAGGGAAATCGTTGTCGATAATG GTGAACCAGAACCCGTGAAATCCAGAACAGAGGGAAACAATGAGCATCTGGTCGCGACCCTAAAGGCAGAGAAAGAAGAAATGGAATCCTTTCTCACCAA TGAGAAGGTGCAGAATGGCCAACTTAAACAAGAACTATCTGAAGCCGAAGATCGCAACGCTGAGCTTCACAAGGAGCTTCAATCCGTTCGCAGCCAGCTT GCTTCCGAGCAATCAAGGTGTTTCAAGTTAGAGGTTGATGTCGCAGAGTTGCGACAGAAGCTGCAAACGATGGAGGCGCTGCAGAAGGAGCTCGAGCTAC TGCAGCGGCAAAAGGCCGCATCCGAACAAGCAGCTGCCTTAAGCTCAAAGCAGCGGCAGGGATCCGGTGGCGTATGGGGTTGGCTTGCAGGGTCCCCTGG CCACCGTGACGAAGAAGAAGACTGA
AA sequence Show only first row Show all	>Lus10029902 pacid=23159720 polypeptide=Lus10029902 locus=Lus10029902.g ID=Lus10029902.BGIv1.0 annot-version=v1.0 MSMARASSGLAYPDRFFAAAAYVGFDGSPNSTSAVTSKFQTDTALLLYALYQQATVGPCNLSKPSAWNAVELSKWKSWKGLGNMATTEAMRLFVKILEEE DPGWYSRASNLVSEPVVDMPVNHNSEANHAVENGNALPETKTIASENGTHMETLDKDVVSEGFGSVVVYDQWTAPPVSGQRPKSRYEHGAAVIEDKMYIH GGNHNGRYLNDLHVLDLRSWTWSKVEGKVGAEESDSASTLAPCAGHSLIPWENKLISIAGHTKDPSETIQVKGFDLKTGTWSMLKTYGKPPVSRGGQSVT LFGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAIGGPPSPRSDHAAAVHAERYLLIFGGGSHATCFNDLHVLDLQTMEWTRPAQQGDIPTPRAGHA SVTVGENWFIVGGGDNKSGASETVVLNMSTLVWSVVTSVQGRVPIASEGLSLVVRSYNGDDVLVAFGGYNGRYNSEVNVLKPSHKSTLQSKIMESPVPDS VSAVHNVTNPTRDLDAEIELSQESKIREIVVDNGEPEPVKSRTEGNNEHLVATLKAEKEEMESFLTNEKVQNGQLKQELSEAEDRNAELHKELQSVRSQL ASEQSRCFKLEVDVAELRQKLQTMEALQKELELLQRQKAASEQAAALSSKQRQGSGGVWGWLAGSPGHRDEEED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05420		ACBP4	acyl-CoA binding protein 4 (.1...		Lus10029902 [exp]	0	1
AT3G11950		ATHST	TRAF-like superfamily protein ...		Lus10029325 [exp]	1.0	0.9431
AT5G11980			conserved oligomeric Golgi com...		Lus10026437 [exp]	1.7	0.9373
AT4G34450			coatomer gamma-2 subunit, puta...		Lus10042326 [exp]	2.4	0.9415
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Lus10005560 [exp]	6.0	0.9154
AT1G13860		QUL1	QUASIMODO2 LIKE 1 (.1.2.3.4)		Lus10036883 [exp]	6.3	0.9319
AT1G64650			Major facilitator superfamily ...		Lus10033228 [exp]	6.6	0.8862
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Lus10013695 [exp]	7.2	0.9046
AT2G26680			unknown protein		Lus10043275 [exp]	7.5	0.9041
AT1G52360			Coatomer, beta' subunit (.1.2)		Lus10037524 [exp]	7.5	0.9239
AT2G20840			Secretory carrier membrane pro...		Lus10018562 [exp]	7.5	0.9280

Compare expression of checked genes

Lus10029902 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.