Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05410 286 / 2e-97 Photosystem II reaction center PsbP family protein (.1.2) AT4G15510 42 / 9e-05 Photosystem II reaction center PsbP family protein (.1.2.3) AT1G76450 40 / 0.0006 Photosystem II reaction center PsbP family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004498 [exp] 215 / 4e-71 AT3G05410 209 / 4e-68 Photosystem II reaction center PsbP family protein (.1.2) Lus10003289 [exp] 56 / 4e-09 AT3G55330 267 / 7e-91 PsbP-like protein 1 (.1) Lus10030326 [exp] 54 / 1e-08 AT3G55330 268 / 7e-91 PsbP-like protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G027100 [exp] 232 / 5e-77 AT3G05410 246 / 6e-82 Photosystem II reaction center PsbP family protein (.1.2) Potri.010G210200 [exp] 46 / 8e-06 AT3G55330 299 / 2e-103 PsbP-like protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0619 [flax] [poplar] Mog1p_PsbP PF01789 [flax] [poplar] PsbP PsbP
Representative CDS sequence Show only first row Show all	>Lus10029903 pacid=23159653 polypeptide=Lus10029903 locus=Lus10029903.g ID=Lus10029903.BGIv1.0 annot-version=v1.0 ATGGCATGTAGAACTCCGTCCTTCCACAGGATTCTCATGACCCAATCGTCGGAAGATCGGAAAGAAGCGTCGAGCAACACCTTAACCAGACCACCAGCCG AGCAATTCCGCCCACTAGCATCAAAATTCGGCCGGCGGTTGCTTCTCGGGACAGGCTCAGCTTCACTTGTTGCCGTCGGAGCTAACTTCGTCGGACTCAC AAGCTTCCTCCTCGGTTTGTCGCCGGATACCGGTCGGAATCTCAAACTCGATGTCGTTTATCCGATCGGAGGATACAGACGTTGCATTGACACCAGCGAC GGATTCGACGGAAGGGGGAGGTACAGCGTAACCGAGCCGGCGGTGGCGTTTGGTCCGCCGGGATCCACCGGAGAGCTCAACGTCAGCGTTATTGTCTCCC CAGTCCCTCCAGACTTCTCAATTGAAGCGTTCGGAGGAGCGGACGAGGTGGGGCAGGCAATCGTTCGGACGATCGCCGGGCGACGGCCTGATGTGATGGG AACTCTGATGAAATCAAGATTAAGATTGGATTCCGAGAGGAATGTGAAGTACTATGAGATTGAGTTCAGAGTTGAGAGCCCTTCGTTTCAGAGGCACAAT GTAGCTGTTTGCTGTGCTGTTGATGGCCGGCTGTTCACGTTGAATGCTCAGGCGCCGGAATCTGGGTGGATGGGTGTCGAGAAGGATTTTCGACTAATCG CGGAATCGTTTCGTCTTGTGATCTCTTGA
AA sequence Show only first row Show all	>Lus10029903 pacid=23159653 polypeptide=Lus10029903 locus=Lus10029903.g ID=Lus10029903.BGIv1.0 annot-version=v1.0 MACRTPSFHRILMTQSSEDRKEASSNTLTRPPAEQFRPLASKFGRRLLLGTGSASLVAVGANFVGLTSFLLGLSPDTGRNLKLDVVYPIGGYRRCIDTSD GFDGRGRYSVTEPAVAFGPPGSTGELNVSVIVSPVPPDFSIEAFGGADEVGQAIVRTIAGRRPDVMGTLMKSRLRLDSERNVKYYEIEFRVESPSFQRHN VAVCCAVDGRLFTLNAQAPESGWMGVEKDFRLIAESFRLVIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05410			Photosystem II reaction center...		Lus10029903 [exp]	0	1
AT1G68010		ATHPR1, HPR	hydroxypyruvate reductase (.1....		Lus10019793 [exp]	1.0	0.9430
AT2G21530	FHA		SMAD/FHA domain-containing pro...		Lus10001966 [exp]	3.7	0.9415
AT5G59200		OTP80	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10005294 [exp]	3.9	0.9242
AT1G42970		GAPB	glyceraldehyde-3-phosphate deh...		Lus10012243 [exp]	4.5	0.9380
AT1G45230			Protein of unknown function (D...		Lus10006488 [exp]	5.7	0.9289
AT1G51400			Photosystem II 5 kD protein (....		Lus10014908 [exp]	6.2	0.9399
AT5G09660		PMDH2	peroxisomal NAD-malate dehydro...		Lus10020501 [exp]	9.5	0.9299
AT3G47070			unknown protein		Lus10001204 [exp]	10.2	0.9373
AT1G18730		PnsB4, NDF6	Photosynthetic NDH subcomplex...		Lus10001645 [exp]	11.2	0.9367
AT4G18780		LEW2, IRX1, ATC...	LEAF WILTING 2, IRREGULAR XYLE...		Lus10022449 [exp]	12.0	0.9058

Compare expression of checked genes

Lus10029903 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.