Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03840 319 / 3e-104 C2H2ZnF MGP Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) AT1G55110 316 / 1e-103 C2H2ZnF ARABIDOPSISTHALIANAINDETERMINATE(ID)-DOMAIN7, ATIDD7, ARABIDOPSISTHALIANAINDETERMINATE(ID)-DOMAIN7 indeterminate(ID)-domain 7 (.1) AT5G44160 313 / 2e-102 C2H2ZnF AtIDD8, NUC nutcracker, INDETERMINATE DOMAIN 8, C2H2-like zinc finger protein (.1) AT3G13810 313 / 2e-101 C2H2ZnF ATIDD11 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3) AT5G66730 311 / 3e-101 C2H2ZnF IDD1, ENY INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) AT3G50700 308 / 1e-100 C2H2ZnF ATIDD2 indeterminate(ID)-domain 2 (.1) AT5G03150 307 / 1e-99 C2H2ZnF JKD JACKDAW, C2H2-like zinc finger protein (.1) AT3G45260 303 / 7e-99 C2H2ZnF C2H2-like zinc finger protein (.1) AT4G02670 302 / 7e-99 C2H2ZnF ATIDD12 indeterminate(ID)-domain 12 (.1) AT2G02080 301 / 6e-97 C2H2ZnF ATIDD4 indeterminate(ID)-domain 4 (.1), indeterminate(ID)-domain 4 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004497 [exp] 588 / 0 AT1G55110 341 / 5e-113 indeterminate(ID)-domain 7 (.1) Lus10008396 [exp] 320 / 6e-104 AT3G13810 339 / 1e-110 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3) Lus10010820 [exp] 310 / 8e-104 AT3G50700 349 / 2e-119 indeterminate(ID)-domain 2 (.1) Lus10004840 [exp] 317 / 1e-102 AT3G13810 337 / 1e-110 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3) Lus10007168 [exp] 314 / 5e-102 AT5G66730 386 / 2e-129 INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) Lus10019927 [exp] 310 / 7e-101 AT5G03150 386 / 6e-130 JACKDAW, C2H2-like zinc finger protein (.1) Lus10026497 [exp] 309 / 1e-100 AT5G03150 384 / 2e-129 JACKDAW, C2H2-like zinc finger protein (.1) Lus10041723 [exp] 309 / 5e-100 AT3G50700 489 / 1e-170 indeterminate(ID)-domain 2 (.1) Lus10041356 [exp] 313 / 5e-97 AT1G03840 332 / 2e-103 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G019200 [exp] 330 / 2e-108 AT3G50700 327 / 4e-107 indeterminate(ID)-domain 2 (.1) Potri.002G208444 [exp] 328 / 4e-107 AT3G50700 311 / 2e-100 indeterminate(ID)-domain 2 (.1) Potri.005G027200 [exp] 325 / 2e-106 AT1G03840 300 / 7e-96 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Potri.017G017100 [exp] 315 / 4e-103 AT1G03840 459 / 1e-158 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Potri.007G135000 [exp] 315 / 8e-103 AT1G03840 435 / 3e-149 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Potri.002G048000 [exp] 313 / 4e-102 AT4G02670 362 / 6e-122 indeterminate(ID)-domain 12 (.1) Potri.006G129300 [exp] 311 / 6e-101 AT5G03150 371 / 1e-123 JACKDAW, C2H2-like zinc finger protein (.1) Potri.016G088500 [exp] 310 / 2e-100 AT5G03150 353 / 1e-116 JACKDAW, C2H2-like zinc finger protein (.1) Potri.007G028800 [exp] 310 / 2e-100 AT5G66730 416 / 1e-140 INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) Potri.003G036900 [exp] 310 / 4e-100 AT1G55110 372 / 3e-124 indeterminate(ID)-domain 7 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029904 pacid=23159851 polypeptide=Lus10029904 locus=Lus10029904.g ID=Lus10029904.BGIv1.0 annot-version=v1.0 ATGTCAAATATCAAAGGTGGGATCTTTGGTGGAGATGAAGACGACCAACAACAACTAATATTGGCTTCACAACAACAACAAGAAGTAGCTACCCATCATC ATCTTCACCATCATCATCATTTGATAAGCTCCATAGCTAATTCAACCACAACAACCAGCAACTCCAATGGTTCCATTACCACTATCACTACTACTCAACC AGCCCCTCATCTCATCAAGAAGAAGAGAAATCTCCCCGGGAATCCCGATCCGAAAGCCGAAGTGATTGCTCTATCGCCAAAGACGCTCATGGCCAAGAAT CGGTTTGTGTGCGAGATATGCAGCAAAGGGTTCCAAAGGGATCAAAACCTCCAGCTACACAGGAGAGGGCATAACCTTCCCTGGAAGCTGAAGCAAAGAA ATAAAGACGAGGTGATAAGAAAAAAAGTATACGTTTGTCCTGAACCGGATTGTGTCCATAACAACCCGGCTCGAGCCCTGGGCGACTTGACCGGGATCAA GAAGCACTTTAGTAGGAAGCATGGGGAGAAGAGGTGGAAGTGCGAGAAGTGTTCGAAGAAATATGCTGTCCAGTCTGATTGGAAGGCCCATTCCAAGTCA TGTGGGACTAAGGAGTACAAATGCGATTGTGGTACCGTATTCTCCAGGAGAGACAGCTTCATAACACACAGAGCATTCTGCGATGCCCTAGCTGAGGAAA CCAAAGCATCAGCTGGAATCATAGTGAATCACTCCACTCCACAATCAGTATCTAATTACCAAATCACCCTCAACACCAACAACAAGCCAAACCCAGATCA TCAGTTATTCAACCCTACTCCCCCGGAAACGACGTCGTCCAAACTCAACCATTTCATCTCTCTACCACCACCGCCGACGACCACTTCCACCACCTTGTCA TCCTCCCTGCACCTCAGCACCACCCCGTTTTTTGCCAGCTCATCAGCGTCCATGTCAGCCACCGCGCTCCTGCAGAAGGCTGCCCAGATGGGGTCCACCC TCGGCAGCTGCCGTCCCACCACTCCGTTTCCCTCCACCACCACCTCGTCGCCGTCAACTAACGGCATGCAGCTGTTCATGCGGGGTGGCGATCCGTACAG CATCGACAGTAGTCAACTACTTTTCTCCAACCAGTTTTTCCACGATGGACTTATCAACGGTAACTTCCCAGGCTCCCCGGGCTTCGTCAACGCCGGCGGT AATAATAATAATGCCAATTCTGCTGCCGCCGCGTTGTGGAAGAGCTTTGACGATGGGATGACGACGGTTGACTTCTTGGGGGTTAATAATGGGGAGACGA CGTCGTCTGCTTCGAGGGTTACGAGGAATATGGACATGGTTCTTACTAGGTTTGATGATGAGCCGCCACTTAATTAA
AA sequence Show only first row Show all	>Lus10029904 pacid=23159851 polypeptide=Lus10029904 locus=Lus10029904.g ID=Lus10029904.BGIv1.0 annot-version=v1.0 MSNIKGGIFGGDEDDQQQLILASQQQQEVATHHHLHHHHHLISSIANSTTTTSNSNGSITTITTTQPAPHLIKKKRNLPGNPDPKAEVIALSPKTLMAKN RFVCEICSKGFQRDQNLQLHRRGHNLPWKLKQRNKDEVIRKKVYVCPEPDCVHNNPARALGDLTGIKKHFSRKHGEKRWKCEKCSKKYAVQSDWKAHSKS CGTKEYKCDCGTVFSRRDSFITHRAFCDALAEETKASAGIIVNHSTPQSVSNYQITLNTNNKPNPDHQLFNPTPPETTSSKLNHFISLPPPPTTTSTTLS SSLHLSTTPFFASSSASMSATALLQKAAQMGSTLGSCRPTTPFPSTTTSSPSTNGMQLFMRGGDPYSIDSSQLLFSNQFFHDGLINGNFPGSPGFVNAGG NNNNANSAAAALWKSFDDGMTTVDFLGVNNGETTSSASRVTRNMDMVLTRFDDEPPLN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55110	C2H2ZnF	ARABIDOPSISTHAL...	indeterminate(ID)-domain 7 (.1...		Lus10029904 [exp]	0	1
AT2G35940	HD	BLH1, EDA29	embryo sac development arrest ...		Lus10029405 [exp]	2.2	0.9168
AT4G38660			Pathogenesis-related thaumatin...		Lus10028447 [exp]	2.4	0.9007
AT5G02030	HD	PNY, BLR, BLH9,...	VAAMANA, REPLUMLESS, PENNYWISE...		Lus10021498 [exp]	4.2	0.9068
AT4G16370		ATOPT3	oligopeptide transporter (.1)		Lus10038784 [exp]	4.2	0.8893
AT5G02030	HD	PNY, BLR, BLH9,...	VAAMANA, REPLUMLESS, PENNYWISE...		Lus10022599 [exp]	5.9	0.8982
AT5G60200	DOF	TMO6, AtDof5,3	TARGET OF MONOPTEROS 6 (.1)		Lus10007774 [exp]	5.9	0.8937
AT2G23140			RING/U-box superfamily protein...		Lus10032023 [exp]	10.4	0.8725
					Lus10040811 [exp]	10.8	0.8985
AT2G39450		ATMTP11	Cation efflux family protein (...		Lus10040318 [exp]	11.0	0.8815
AT5G52450			MATE efflux family protein (.1...		Lus10029668 [exp]	11.5	0.8981

Compare expression of checked genes

Lus10029904 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.