Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G13610 689 / 0 ABCG5 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) AT1G53270 464 / 1e-156 ABCG10 ATP-binding cassette G10, ABC-2 type transporter family protein (.1) AT5G52860 439 / 5e-147 ABCG8 ATP-binding cassette G8, ABC-2 type transporter family protein (.1) AT4G25750 439 / 6e-147 ABCG4 ATP-binding cassette G4, ABC-2 type transporter family protein (.1) AT5G19410 425 / 6e-141 ABCG23 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) AT3G55110 354 / 1e-112 ABCG18 ATP-binding cassette G18, ABC-2 type transporter family protein (.1) AT3G55100 345 / 1e-109 ABCG17 ATP-binding cassette G17, ABC-2 type transporter family protein (.1) AT3G55130 342 / 8e-108 ABCG19, ATWBC19 ATP-binding cassette G19, white-brown complex homolog 19 (.1) AT3G55090 337 / 1e-105 ABCG16 ATP-binding cassette G16, ABC-2 type transporter family protein (.1) AT5G13580 331 / 2e-103 ABCG6 ATP-binding cassette G6, ABC-2 type transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004496 [exp] 1121 / 0 AT2G13610 729 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Lus10017683 [exp] 444 / 2e-148 AT5G19410 731 / 0.0 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) Lus10033637 [exp] 442 / 2e-146 AT5G19410 735 / 0.0 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) Lus10000737 [exp] 437 / 3e-145 AT5G19410 754 / 0.0 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) Lus10027545 [exp] 429 / 1e-142 AT5G52860 781 / 0.0 ATP-binding cassette G8, ABC-2 type transporter family protein (.1) Lus10008500 [exp] 421 / 3e-139 AT5G19410 758 / 0.0 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) Lus10023465 [exp] 344 / 7e-108 AT2G39350 1064 / 0.0 ATP-binding cassette G1, ABC-2 type transporter family protein (.1) Lus10025281 [exp] 331 / 3e-103 AT2G37360 1035 / 0.0 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Lus10033663 [exp] 305 / 5e-94 AT2G39350 454 / 6e-151 ATP-binding cassette G1, ABC-2 type transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G104801 [exp] 739 / 0 AT2G13610 949 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Potri.005G064300 [exp] 736 / 0 AT2G13610 900 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Potri.013G117700 [exp] 508 / 2e-173 AT1G53270 666 / 0.0 ATP-binding cassette G10, ABC-2 type transporter family protein (.1) Potri.011G112100 [exp] 503 / 1e-171 AT1G53270 753 / 0.0 ATP-binding cassette G10, ABC-2 type transporter family protein (.1) Potri.001G393300 [exp] 499 / 6e-170 AT1G53270 756 / 0.0 ATP-binding cassette G10, ABC-2 type transporter family protein (.1) Potri.009G070100 [exp] 448 / 1e-149 AT5G19410 707 / 0.0 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) Potri.015G027600 [exp] 419 / 5e-139 AT5G52860 733 / 0.0 ATP-binding cassette G8, ABC-2 type transporter family protein (.1) Potri.002G156900 [exp] 352 / 4e-111 AT3G53510 950 / 0.0 ATP-binding cassette G20, ABC-2 type transporter family protein (.1) Potri.014G080200 [exp] 350 / 1e-110 AT2G37360 955 / 0.0 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Potri.006G215100 [exp] 349 / 2e-110 AT3G53510 860 / 0.0 ATP-binding cassette G20, ABC-2 type transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0181 [flax] [poplar] ABC-2 PF01061 [flax] [poplar] ABC2_membrane ABC-2 type transporter CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10029905 pacid=23159793 polypeptide=Lus10029905 locus=Lus10029905.g ID=Lus10029905.BGIv1.0 annot-version=v1.0 ATGAAGAAACAAGGATTCGAAATCGAAGCGTCAGGGATCACCTACACAATCCCGGCGAAGCCCCCGCCGCCGGGAAAATACCCGTCTTTCTTCACCGACG TGTTTCCCGGCGCCGGAGACGAGGAAAAACTACCACCGCCGATAACAAAGACAAGGCATGTCCTGAAGGACGTCAACCTGACGGCGAAGCCGTGGGAGAT TCTGGCAATCGTGGGGCCTAGCGGCGCCGGGAAATCCACTCTGCTGTCGATCCTCGCCGGGAAAATCACCCCGACATCTGGCTCCGTCCTGGTTAACGGC GGCCAAGTCGACGACAACGACCGACGAAGATTCCTCAACAAGATCTCCGGCTACGTCACCCAACGGGACACATTATTCCCTCTCCTTACTGTCGAGGAAA CGCTAACTTTCATCGCCAAGCTCAGAATCCCCAACGCCGAGATCGGGTCGCGGGTCGGATCATTGATCCAGGAGCTCGGGTTGAGCCACGTGGCGAATAC TCGGGTCGGTGACGAGTCATGCCGGGTCAGGGGAATATCCGGCGGGGAAAGAAGGCGGGTCTCGATCGGGGTTGGAGTGATCCACGACCCGAAGGTTCTG ATCCTCGACGAACCGACTTCGGGACTGGACAGCTCGTCGGCGCTGCAGATCGTCGGAATGCTGAAGGCTATGGCGGAGACTAGAGGAAGGACGATCGTGG TCAGCATTCACCAACCCGGGTTTCGAATCATCAAGCTGTTCGGTTCGATTTTTTTCATGGCTGGCGGGTCCGGTTTGTTCCAGGGGTCAGTCGATCAGCT CGGGTTGAGGTTGCGGTCGATCGGGCTGGAGGTTCCCGGTCATGCCAATGTGGTAGAGTTCGCCATGGAATCAATTGATTCGTTCGAAGAAGCTATTCGT AACAACGGCAATGAGATTCGAAACTCGAGACAGAGGAAAACTGAGAAGTGCACTCTTCAACAACTTTTCGACGGGAATCGAATAGTAGACGAGGAAACCG CAATTATCGATGTCGGATTCGACGATCTCGATTTCCGAGTTCGGAATCAGTACCCGAATTCTTGGTTTCGTGAAACCATGATTCTTACTCACAGATTCTC AAAGAACATATACAGAACAAAGGAGCTATTCGCCGGCCGATCAATCCAGATGCTAATCTCCGGCCTAGTCCTGGGCTCAGTCTTCTCCAACGTGAAACCA GATCTCGTCGGAGCTCGAGAACAAGTCGGCCTATTCGCATTCATCCTAACATTCCTCCTCTCATGCACAACAGAGGCCCTCCCAATTTTCCTCCAAGAGC TCGAGATCTTCAAGAACGAAACCTCCTCCAAAAGCTACAGAGTCTCATCCTACGCCGTCGCCAATTCCTTAGTCTACCTCCCGTTCCTCCTAATTCAATC GATCCTCTTCTCAATTCCGGTCTACTTCCTCTCAAATCTAAACCCTAATTTCAAACACTTCTCCTTCTTCCTCCTCCTAATCTGGCTAATCCTCTACACG GCCAATTCAGTCGTCACCTGCTTCAGCACTCTGGTCCCGAATTTCATCGTCGGAAACTCTGTGATCCAGGGGGTGATGGGTTCCTTCTTCCTCTTCTCCG GCTACTTCGTCTCCAGACAGGGAATCCCTGACTACTGGATATTTATGCATTATGTCTCCTTGTTTAAGTATCCGTTTGAAGGGTTTCTGATCAACGAGTT TGCCGACCCCGGGAAGTGTATCGAGACTGTGCTCGGTGCTTGCGCCGTCACCGGTGAGGCGGTGCTGAAGGAGGAAGGGTACGGCGGGGAGGAAGGAAGG TGGAGAAACGTTGCGATTATGGTTGGGTTTATTGTGTTCTATAGGTTTATGGGGTATTTGATTCTTAGGGTCAGGTGTTCTTCTTCTTCTTCCGCCGGTG GTGGTTCAAGGCGGCGGCGGAGGGGGATCGGGTCGGGTAAGAATAAGATCTGTGCCCGGAAACCGTGCCCGGTTGGGCAGGTGGAATTGTGA
AA sequence Show only first row Show all	>Lus10029905 pacid=23159793 polypeptide=Lus10029905 locus=Lus10029905.g ID=Lus10029905.BGIv1.0 annot-version=v1.0 MKKQGFEIEASGITYTIPAKPPPPGKYPSFFTDVFPGAGDEEKLPPPITKTRHVLKDVNLTAKPWEILAIVGPSGAGKSTLLSILAGKITPTSGSVLVNG GQVDDNDRRRFLNKISGYVTQRDTLFPLLTVEETLTFIAKLRIPNAEIGSRVGSLIQELGLSHVANTRVGDESCRVRGISGGERRRVSIGVGVIHDPKVL ILDEPTSGLDSSSALQIVGMLKAMAETRGRTIVVSIHQPGFRIIKLFGSIFFMAGGSGLFQGSVDQLGLRLRSIGLEVPGHANVVEFAMESIDSFEEAIR NNGNEIRNSRQRKTEKCTLQQLFDGNRIVDEETAIIDVGFDDLDFRVRNQYPNSWFRETMILTHRFSKNIYRTKELFAGRSIQMLISGLVLGSVFSNVKP DLVGAREQVGLFAFILTFLLSCTTEALPIFLQELEIFKNETSSKSYRVSSYAVANSLVYLPFLLIQSILFSIPVYFLSNLNPNFKHFSFFLLLIWLILYT ANSVVTCFSTLVPNFIVGNSVIQGVMGSFFLFSGYFVSRQGIPDYWIFMHYVSLFKYPFEGFLINEFADPGKCIETVLGACAVTGEAVLKEEGYGGEEGR WRNVAIMVGFIVFYRFMGYLILRVRCSSSSSAGGGSRRRRRGIGSGKNKICARKPCPVGQVEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G13610		ABCG5	ATP-binding cassette G5, ABC-2...		Lus10029905 [exp]	0	1
AT3G05980			unknown protein		Lus10002455 [exp]	3.7	0.8530
AT5G09760			Plant invertase/pectin methyle...		Lus10005587 [exp]	4.5	0.8298
AT2G13610		ABCG5	ATP-binding cassette G5, ABC-2...		Lus10004496 [exp]	6.9	0.8635
AT3G55610		P5CS2	delta 1-pyrroline-5-carboxylat...		Lus10040264 [exp]	8.0	0.7868
AT1G48100			Pectin lyase-like superfamily ...		Lus10017109 [exp]	11.0	0.8274
AT1G48100			Pectin lyase-like superfamily ...		Lus10037834 [exp]	15.8	0.8380
AT3G61490			Pectin lyase-like superfamily ...		Lus10007922 [exp]	19.0	0.7825
AT5G09760			Plant invertase/pectin methyle...		Lus10013720 [exp]	24.3	0.7821
AT3G23990		HSP60-3B, HSP60	HEAT SHOCK PROTEIN 60-3B, heat...		Lus10011902 [exp]	26.9	0.8095
AT1G02370			Tetratricopeptide repeat (TPR)...		Lus10004173 [exp]	29.2	0.8153

Compare expression of checked genes

Lus10029905 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.