Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09040 370 / 2e-111 unknown protein AT1G09050 360 / 7e-108 unknown protein AT1G55050 321 / 2e-93 unknown protein AT2G47820 310 / 1e-90 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004495 [exp] 1965 / 0 AT1G09050 376 / 1e-113 unknown protein Lus10037506 [exp] 342 / 3e-102 AT1G09050 359 / 7e-112 unknown protein Lus10006519 [exp] 334 / 3e-99 AT1G09040 350 / 1e-108 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G019300 [exp] 525 / 2e-169 AT1G09040 384 / 1e-118 unknown protein Potri.005G027300 [exp] 502 / 1e-160 AT1G09040 386 / 1e-119 unknown protein Potri.008G210200 [exp] 373 / 9e-113 AT2G47820 375 / 4e-117 unknown protein Potri.010G023900 [exp] 337 / 1e-99 AT2G47820 381 / 2e-119 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029906 pacid=23159840 polypeptide=Lus10029906 locus=Lus10029906.g ID=Lus10029906.BGIv1.0 annot-version=v1.0 ATGGAGCCTATTCAACAGGATCATGACGACGAGGATCTAGTGAAAGAAAGAGATGTGGAACGAGTAGTTTCTGCAAGTTTACCGAATATATGTGGCGTCT CCGGATCTCCAAGCCTGAATCCTAGAATCGGAGACGACTATCAAGTCAAAATCCCTGCATTGATGTCAGAATCAGAACAGCTTCAGCTTTTGAAATGCCC TTTGGGTTCAGAAGGAACACCGGACTCTTCCATTCGCTTCCTCAAAGGCCTGCCCATCTCGATCATGCTCATTCACGATAAAGTCGACCCTGATGGCAAA AAAGAACTCAAATTGCTAAGCTACTGTGGCAATGCAGCTGGAACCAAGAAGTCCAGCAAGTCTGGAAAGAACAAGAAAGTCAATGCTGTTGAAAAAACTG TTTCAGAGCCGGATGAAGAACCCCTTGATGACATATATGAGAAAACAAAGCTAGAGAAAGCGAGATCGAAATGCAGCAGGACGAAAATGCGTTTTTGCTT AGTTCCTGGGATGTTAGGAAGCAGTTGGGATGAAGACCAAGTGGAGAGCTTTATCCTCGGCTTATACATTTTCGGTAAGAGCTTCGTCTCAGTGAAGAAA TTCGTCGACAACAAAGGAATGGGCGACATATTGTCATTCTACTATGGGAGATTATATGGTTCTGATAGATACAACAAATGGTCAGATAGTCGTAAGGTGA AGAGGAAGAAGTTCATCTCCGGCGAAAAGCTTTTCACTGGATGGCGCCAGCAGGAACTCGTTTCGCGATTGCAACCTCACATCCCGGAGAGTTACCAGAA GACTTTCCAAGAGATGTCCGAGGCGATCGCTGAGGGGAATATCCCGTTGGAAGAATATGTCTCCAACTTAAAAGCTGCGGTTGGGATTCAAGTTTTGGTA GAAGCTATTGGGATTGGTAAGGGGAAGGAAGATCTGACGAATCCTGCAATGGAATCATCTATGATGTTTCCTGCTACTAGCAAGGCTTGTTCATCGCTCA CGACAAACGAGATCGTGAATCTCTTGACTGGTGGATTCCGATTGAGCAAAGCTCGCTGCAACGACATCTTCTGGGAAGCTGTTTGGCCGCGGTTGCTGGC ACGAGGGTGGCACTCTGAGCAGCCAAACAACCTGACTTACCTCGATGGGAAAACATATCTCGTTTTCCTTGTCCCCGGTGTCAAGAAGTACTCGAGACGG GATCTTGTGAAAGGGATCCAGTATTTCGATTCCCTTAATGATGTTCTAAGTAAAGTGGCGTCCGAACCAAAGCTGATGGAGCTTGAAGAAGTAAATGGAT GCAATACAAACGAGTCGCAACAATCGTCGGATTCTCGACAACATTACCTCAAGCCTCGAGTTTCTAACGGTGGTACACGGTCTGTGAAGTTCACTGTCGT GGACTCGAGCTCATCCTTGCATGGGATGAAATTAGTTCAAGCGAAGAGGATGAGATATTCGTCGCGTGATCTGATGGTTACGTCTATGGTTACAAAGATC ACAGGTGTAGCAGGAACTTTGTCGATCGAGGATACGAAGGAGGAAGGTGAAGAAGAGGACGACATTAAGGATGTGAAAACGGTTAAAACGGTCAACGAAG TCAAAGCACAATATGTCAAGCTCGATAAGGTGGTTCCGCCGAATAATGATAAATCAGCAACGTTCACCATTGTCGATACTAGCGTGGCTCGTAGAGATAA ATCGTGGAAGGTCTTTGCACTCAGGCATTTACCGACTGTTGATGATAAAGTTACTCGTCGGTGGATCAATCTGTCGAAAGAAGATCAGAAAACTGATAAG GATCTCAAAATGGATGATGCTGCAGATTCAGCTGGTAAAGAGTCACATAGCAAAAGTAATGTGCAAGGATCTGATAAGCTTACTCAAGGTAGTTCAGAGC CAGGGAAACCGAGTTCAGACACTCTGGATCAGTGCATTGAATCGAATGGAACTCAGTCGCGCGTTAAGGCAGCAATGCAACAATTCAGCAGAAGGCCGAA ATCTGGACATTCAAACAACTTGGTTCCTCTTGTGAAACGGCGTAGGTTAACTGCTTGCATCAGTACAGAGATAAACCAAGTCATGGCGAACTTTCCTGGT AAACTTGGGTCACAAGAAAAGAAGATTCGATCTAGTTTAGACTTGTTGTCAAAGAAGGCAGTCAGGAAAACCATCCCTGATGAGTGTGCTGATCACGGGG GAAGCGGTATAGCCATATCAAAAGCCAGTGCTTCTGGCCGTGAACCGTTGCTAGTAAAGCTTCCTGGTATACTTGGGTCGAAAGGGAAGAAGGTTCGCTA CGATTTGGACAACAGCCTTGAAGCCGGTCCTCTAGCAGCACCAAGTGAGCCTGGATCGTTGCTGCTTAGGTTTCCGTGTAAACTTGGGTCGAAAAGGAAG AAGGTTCGCTACAATGTAGACACACCAGAGACAATCAGGAGGGACGACAGTCTAGTGGTCGGTCTTCAAGCAAAGCCCTCAACAGCTGAAGGGCGTTCAG ATAAATTTGGATCGAGACGGAAGAAGGTTCACTATGATGTGGACTCGTCATTGAATGCAATCAGGAAGAACAATGGTCTTGAATTCGGTCCTGATCATGC AAAGCCATCATCTGTCGAAGGGTGTTCGGATGAACCTGGATCGTTGCTGCTAAAATTTCCCTGCAAACTTGGTTCTAAAATCGAAATTGCCCCTCAAGCA AAGCCGTCAACAGCTGAAGTCTGTTCCGTTGCAGTCATTTCGAAAAAAACTGTTCCTGCTGCTCATCTACCGGACATAAAGCAGCAAGAACCGGAATCTT TGCCCGGCTTGAACCTCCCAAAATCGCGGAAGGAATCCGAAACTCGTCAACTAGAGATTAAAGAGATGGAAACGAGTGAATGTGTTACTTCTGAGCCAAG AAATGTTAATCCTGGAGTGGAACCACAAGAGACTGAAATGGGATGCAGGAGGCAAAGCAGAAGAAACCGGCCATTGACTACAAGAGCATTGGAAGCTCTC GAATACGAGTTTCTGAATATGAAGAAGCGGCCTAGGACTACACAGGAAAGTTCGTCTTCTCGTAGGGCTCGTAGCAAGAAGAGCAAAGTGATGGCATCGT CAGCAACACATTCTGCTGATACTAGTACCATCAAGCTTGAGGATGTGGTTGCTAATGAACAAAAGACCGAAAAGGAAGGAACTACTTCGAGCATCAATGA ACATACCGAGGATAAACCAGCACCCAAGATCGAAAATGGAGGGACATCTTCAAGCGTTGATGATCGTTCTGATGTGAAGCCTTTAGTGGAGACGAAGGAT ATAGAAAACGGAGTTAAAGCTTCGTGCATCGACGAACATTGTGAGGGTAAACCAGCATCGACCATGGATACACACAAGATCGAGAATGGAGTGACTACCC CGATCGTCGATGAACATTCTGAGGATAAACCAGCATCGAACACAGATACACACAAGATCGGGAATGAAGTAACTACTTCAATCGTCGATGAACAACATTC TGAGGGTAAACCAGCATCCACCACTGATCCTCAGAGCTGCTGCTGCCCTTCAAGCTGA
AA sequence Show only first row Show all	>Lus10029906 pacid=23159840 polypeptide=Lus10029906 locus=Lus10029906.g ID=Lus10029906.BGIv1.0 annot-version=v1.0 MEPIQQDHDDEDLVKERDVERVVSASLPNICGVSGSPSLNPRIGDDYQVKIPALMSESEQLQLLKCPLGSEGTPDSSIRFLKGLPISIMLIHDKVDPDGK KELKLLSYCGNAAGTKKSSKSGKNKKVNAVEKTVSEPDEEPLDDIYEKTKLEKARSKCSRTKMRFCLVPGMLGSSWDEDQVESFILGLYIFGKSFVSVKK FVDNKGMGDILSFYYGRLYGSDRYNKWSDSRKVKRKKFISGEKLFTGWRQQELVSRLQPHIPESYQKTFQEMSEAIAEGNIPLEEYVSNLKAAVGIQVLV EAIGIGKGKEDLTNPAMESSMMFPATSKACSSLTTNEIVNLLTGGFRLSKARCNDIFWEAVWPRLLARGWHSEQPNNLTYLDGKTYLVFLVPGVKKYSRR DLVKGIQYFDSLNDVLSKVASEPKLMELEEVNGCNTNESQQSSDSRQHYLKPRVSNGGTRSVKFTVVDSSSSLHGMKLVQAKRMRYSSRDLMVTSMVTKI TGVAGTLSIEDTKEEGEEEDDIKDVKTVKTVNEVKAQYVKLDKVVPPNNDKSATFTIVDTSVARRDKSWKVFALRHLPTVDDKVTRRWINLSKEDQKTDK DLKMDDAADSAGKESHSKSNVQGSDKLTQGSSEPGKPSSDTLDQCIESNGTQSRVKAAMQQFSRRPKSGHSNNLVPLVKRRRLTACISTEINQVMANFPG KLGSQEKKIRSSLDLLSKKAVRKTIPDECADHGGSGIAISKASASGREPLLVKLPGILGSKGKKVRYDLDNSLEAGPLAAPSEPGSLLLRFPCKLGSKRK KVRYNVDTPETIRRDDSLVVGLQAKPSTAEGRSDKFGSRRKKVHYDVDSSLNAIRKNNGLEFGPDHAKPSSVEGCSDEPGSLLLKFPCKLGSKIEIAPQA KPSTAEVCSVAVISKKTVPAAHLPDIKQQEPESLPGLNLPKSRKESETRQLEIKEMETSECVTSEPRNVNPGVEPQETEMGCRRQSRRNRPLTTRALEAL EYEFLNMKKRPRTTQESSSSRRARSKKSKVMASSATHSADTSTIKLEDVVANEQKTEKEGTTSSINEHTEDKPAPKIENGGTSSSVDDRSDVKPLVETKD IENGVKASCIDEHCEGKPASTMDTHKIENGVTTPIVDEHSEDKPASNTDTHKIGNEVTTSIVDEQHSEGKPASTTDPQSCCCPSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09040			unknown protein		Lus10029906 [exp]	0	1
AT1G31840			Tetratricopeptide repeat (TPR)...		Lus10009465 [exp]	2.0	0.8962
AT3G44530		HIRA	homolog of histone chaperone H...		Lus10020585 [exp]	2.4	0.9028
AT1G71350			eukaryotic translation initiat...		Lus10034314 [exp]	14.4	0.8093
AT1G36990			unknown protein		Lus10042697 [exp]	14.7	0.8679
AT3G12640			RNA binding (RRM/RBD/RNP motif...		Lus10015696 [exp]	15.9	0.8532
AT1G36990			unknown protein		Lus10029655 [exp]	17.4	0.8721
AT3G04610		FLK	flowering locus KH domain, RNA...		Lus10005530 [exp]	19.6	0.8577
AT2G37310			Pentatricopeptide repeat (PPR)...		Lus10025273 [exp]	19.6	0.8553
AT2G25320			TRAF-like family protein (.1)		Lus10001490 [exp]	19.6	0.8667
AT1G74630			Tetratricopeptide repeat (TPR)...		Lus10023592 [exp]	20.1	0.8431

Compare expression of checked genes

Lus10029906 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.