Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05390 643 / 0 unknown protein AT4G01240 397 / 1e-132 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G27230 258 / 1e-81 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G40830 256 / 7e-81 ATRAD3, ATATR S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G29790 201 / 4e-60 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT4G00740 44 / 0.0001 QUA3 QUASIMODO 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G56080 44 / 0.0003 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G45750 42 / 0.0007 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004494 [exp] 848 / 0 AT3G05390 699 / 0.0 unknown protein Lus10010138 [exp] 402 / 6e-137 AT4G01240 620 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10035135 [exp] 318 / 4e-104 AT4G01240 367 / 1e-120 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10031968 [exp] 315 / 6e-103 AT4G01240 372 / 2e-122 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10020803 [exp] 255 / 2e-80 AT5G40830 282 / 1e-91 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10007385 [exp] 250 / 2e-78 AT5G40830 277 / 1e-89 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10024318 [exp] 225 / 7e-69 AT3G27230 581 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10034506 [exp] 225 / 8e-69 AT3G27230 599 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10033164 [exp] 220 / 3e-65 AT3G27230 451 / 3e-155 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G019400 [exp] 698 / 0 AT3G05390 753 / 0.0 unknown protein Potri.002G165300 [exp] 402 / 4e-137 AT4G01240 662 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.004G116900 [exp] 340 / 8e-113 AT4G01240 388 / 7e-129 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.004G231100 [exp] 254 / 7e-80 AT3G05390 287 / 2e-92 unknown protein Potri.004G083800 [exp] 252 / 5e-79 AT3G05390 278 / 3e-89 unknown protein Potri.017G135100 [exp] 249 / 1e-78 AT3G05390 278 / 3e-89 unknown protein Potri.002G024800 [exp] 246 / 5e-77 AT3G27230 600 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G236600 [exp] 244 / 4e-76 AT3G27230 634 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G352700 [exp] 198 / 5e-59 AT1G29790 437 / 2e-153 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.011G079000 [exp] 194 / 1e-57 AT1G29790 439 / 2e-154 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03141 [flax] [poplar] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10029907 pacid=23159638 polypeptide=Lus10029907 locus=Lus10029907.g ID=Lus10029907.BGIv1.0 annot-version=v1.0 ATGGGGAGATTCTGCCTCCCGAAATGTCGATTCGCGAGGATCATGGCATGGCTACAAGTCATCTTGGGAGGGCTAGTGATACTAGTGAGCTTAGCAAGTC TCTACAAGTTCTACAACGCCGGCTTCTTCCTCCACAATCAAGACATCTGCCGACATTTCTACACGGGGATCGATGTCCACAACGATGGATTCGACATTCG AGCGATCAAGGACCGCGTGGATGAAGTGCTCGACCAGATGGACAGGCTGCAACGGAATCTCGAGAGGTCGGTCAAGACGAAATCGGAGCACAAGAACTTC ATAGAGGAAGAAGTCATCAAGCCTCTTTACAATGCACACATTGCCCTAAGGCAGATCAGGTTCCCGGACATGGAAGATCAAAACTTGAGGATCAAGGAAC CGCCTTTGATCAACGCGTTCATCACAGAAGAGATCAGGAAGTACATAACTCCGAAGTCAAACAGGATTGGGACGAAAGTCAACATTTACGGGACCGGAAA GGTGTACAACACTATAGGCCATTCATGTGCCTTGATGAAGAAGGAACTAGAAGAGTACATGGACTATGACATTGGCTCGTTCTGTAAAGACGACTGGAAC CTCGCTCAGAGGCTCATGATCGGTGGATGTGACCCGTTGCCAAGTAGGCGATGCCTGACTCGAGCCTCGAAGTGGTACAAAAGGCCATACTCGATCAATG AATCCCTATGGAGATTGCCAGAGGATGGCAATGTGAGGTGGAGCAACTACCAATGCAGGAGCTTTACTTGCTTGTCAAGCAAGAACCCTAAAAGGGGTTA CTCGAAATGCACCGGTTGTTTCGAGATGGAAAAGGAAAAGCTCAAATGGGTTACATACTCTCCCCTTCAAGTCGATTTCTTGATCAAGGACGTCTTGGCA ACCAAACCCGGTGAGGTTCGTATAGGGCTGGATTTTGGTATAGGTACCGGAACATTCGCTGCCAGGATGAAGGAACACAATGTCACCATCGTATCGACAT CACTAAACCTCGGAGCTCCGTTCAGCGAGACGATTGCGCTGAGAGGGCTGATCCCTTTATACGTGACGCTGAATCAGAGGCTTCCGTTCTTCGACAACAC GATGGATTTGATCCACACGACGGTGCTGATGGACGGGTGGATGGACATGTTGCTGCTGGATTTCATACTGTATGACTGGGACAGAATCCTGAGGCCTGGG GGATTGCTGTGGATCGACAGGTTCTTCTGCAGTAGGAAGGATTTGGATGATTATATGTACATGTTCCTGCAGTTTAGATACAAGAAGCATAAGTGGGTTC TTGCTCCCAAGTCTGGGGATGAGGTTTACCTGTCTGCCTTGTTGGAGAAGCCACCCAGAGCCATCTGA
AA sequence Show only first row Show all	>Lus10029907 pacid=23159638 polypeptide=Lus10029907 locus=Lus10029907.g ID=Lus10029907.BGIv1.0 annot-version=v1.0 MGRFCLPKCRFARIMAWLQVILGGLVILVSLASLYKFYNAGFFLHNQDICRHFYTGIDVHNDGFDIRAIKDRVDEVLDQMDRLQRNLERSVKTKSEHKNF IEEEVIKPLYNAHIALRQIRFPDMEDQNLRIKEPPLINAFITEEIRKYITPKSNRIGTKVNIYGTGKVYNTIGHSCALMKKELEEYMDYDIGSFCKDDWN LAQRLMIGGCDPLPSRRCLTRASKWYKRPYSINESLWRLPEDGNVRWSNYQCRSFTCLSSKNPKRGYSKCTGCFEMEKEKLKWVTYSPLQVDFLIKDVLA TKPGEVRIGLDFGIGTGTFAARMKEHNVTIVSTSLNLGAPFSETIALRGLIPLYVTLNQRLPFFDNTMDLIHTTVLMDGWMDMLLLDFILYDWDRILRPG GLLWIDRFFCSRKDLDDYMYMFLQFRYKKHKWVLAPKSGDEVYLSALLEKPPRAI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05390			unknown protein		Lus10029907 [exp]	0	1
AT2G01830		CRE1, AHK4, WOL...	WOODEN LEG 1, WOODEN LEG, CYTO...		Lus10028992 [exp]	1.0	0.9793
AT3G24750			unknown protein		Lus10025939 [exp]	3.0	0.9754
AT4G33590			unknown protein		Lus10041131 [exp]	3.2	0.9723
AT3G15730		PLDALPHA1	phospholipase D alpha 1 (.1)		Lus10039806 [exp]	3.2	0.9756
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10034032 [exp]	4.0	0.9630
AT4G25320	AT-hook		AT hook motif DNA-binding fami...		Lus10031118 [exp]	4.0	0.9724
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Lus10024495 [exp]	4.0	0.9698
AT3G08030			Protein of unknown function, D...		Lus10016393 [exp]	5.3	0.9717
					Lus10024615 [exp]	8.1	0.9718
AT4G39330		AtCAD1, ATCAD9	cinnamyl alcohol dehydrogenase...		Lus10017285 [exp]	8.8	0.9657

Compare expression of checked genes

Lus10029907 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.