Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09020 749 / 0 ATSNF4, SNF4 homolog of yeast sucrose nonfermenting 4 (.1) AT1G27070 61 / 2e-09 5'-AMP-activated protein kinase-related (.1) AT3G01510 51 / 1e-06 LSF1 like SEX4 1 (.1) AT4G16360 50 / 1e-06 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3) AT3G52180 49 / 7e-06 ATSEX4, SEX4, ATPTPKIS1, DSP4 STARCH-EXCESS 4, DUAL-SPECIFICITY PROTEIN PHOSPHATASE 4, dual specificity protein phosphatase (DsPTP1) family protein (.1), dual specificity protein phosphatase (DsPTP1) family protein (.2) AT5G39790 46 / 3e-05 5'-AMP-activated protein kinase-related (.1) AT5G21170 45 / 8e-05 AKINBETA1 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2) AT5G03420 45 / 0.0001 5'-AMP-activated protein kinase-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004490 [exp] 971 / 0 AT1G09020 754 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Lus10015179 [exp] 853 / 0 AT1G09020 735 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Lus10031501 [exp] 826 / 0 AT1G09020 701 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Lus10006516 [exp] 665 / 0 AT1G09020 648 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Lus10037503 [exp] 441 / 9e-155 AT1G09020 433 / 9e-152 homolog of yeast sucrose nonfermenting 4 (.1) Lus10037504 [exp] 203 / 1e-62 AT1G09020 195 / 5e-60 homolog of yeast sucrose nonfermenting 4 (.1) Lus10037424 [exp] 63 / 1e-10 AT5G21170 305 / 2e-104 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2) Lus10039076 [exp] 59 / 3e-09 AT4G16360 392 / 2e-138 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3) Lus10038783 [exp] 59 / 3e-09 AT4G16360 395 / 1e-139 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G020400 [exp] 777 / 0 AT1G09020 715 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Potri.005G028800 [exp] 769 / 0 AT1G09020 683 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Potri.010G023500 [exp] 661 / 0 AT1G09020 613 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Potri.008G216800 [exp] 650 / 0 AT1G09020 628 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Potri.005G029300 [exp] 335 / 1e-113 AT1G09020 287 / 3e-95 homolog of yeast sucrose nonfermenting 4 (.1) Potri.005G029900 [exp] 265 / 3e-87 AT1G09020 249 / 1e-81 homolog of yeast sucrose nonfermenting 4 (.1) Potri.006G005800 [exp] 60 / 1e-09 AT4G16360 408 / 3e-145 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3) Potri.010G034600 [exp] 60 / 2e-09 AT1G27070 333 / 4e-108 5'-AMP-activated protein kinase-related (.1) Potri.008G194300 [exp] 59 / 4e-09 AT1G27070 367 / 3e-121 5'-AMP-activated protein kinase-related (.1) Potri.016G006400 [exp] 58 / 5e-09 AT4G16360 415 / 5e-148 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00571 [flax] [poplar] CBS CBS domain
Representative CDS sequence Show only first row Show all	>Lus10029909 pacid=23159777 polypeptide=Lus10029909 locus=Lus10029909.g ID=Lus10029909.BGIv1.0 annot-version=v1.0 ATGTTTGCTGCGGGTTCAGAAGCTGGGCATGATGGTTTAGGAGTGGTTCCTATGCGCTTTGTTTGGCCTTATGGAGGGAGGAATGTGTTTCTCAGTGGTA CTTTTAATGGGTGGACTGACCGCATACCAATGTCACCGATGGAAGGTTGTCCTACGGTGTTTCAAGTTATTTGCAGTTTGACGCCTGGATATCACCAGTA CAAATTTATTGTGGATGGAGAGTGGAGGCACGATGAGCACCAACCTTTTGTTAGTGGAAGTTATGGAGTGATGAATACTGTCTTTCTACCGCGGGAACCA GATGTCGTTCCTGCAACTTATAGTCCTAGGACACCTGGGAGATCCAACATGGACCTGGATGATGTATTTGTTCGTTCGGATGTTGTCCAGGGTATAACAA ATGCTGATTTAGAGGTCTCTCGTAGCCGGATTTTTGCGTTCTTATCAACACATACTGCATACGAGTTGCTCCCTGAGTCAGGCAAGGTTATTGCTTTGGA TGTTAAACTACCCGTTAAGCAAGCATTCCATATTCTCCACGAACAGGGTGTTCCCGTGGCTCCTCTATGGGATTTCTCCAAGGGTCAGTTTGTTGGTGTT CTTAGTGCGATGGATTTCATCTTGATTCTGAGAGAGCTTGGAAATCGTGGATCTAATTTGACGGAGGAGGAGTTGGAAACTCATACTATATCAGCTTGGA AGGAAGGGAAGTTCCATCTTAGCAGACAAATTGACGGCACTGGAAGATCATATCCTAGACATCTTATCCATGCTGGACCTTATGATTCGTTGAAAGACGT TTCCCTGAAAATCTTGCGGGGCAACATTTCCACTATCCCCATTGTCCACTCTGCTTCTCAAGATGGTTCATTCCCACAGCTGTTACATCTAGCTTCCCTT TCCGGGATACTAAAATGTATATGCAGACACTTCAGGCATTCCGCTAGTTCGTTGCCTGTTCTACAACAACCAATTTGTTCGATTCCTTTAGGTACATGGG TTCCGAAAATCGGGGAGTCAAATGCAAGGCCAGTAGCAGTCTTGAGGCCCAATGCTACACTTGGTGCTGCTCTGTCATTATTAGTTCAGGCTGATGTCAG TTCAATACCGATTGTAGACGGCAACGATTCCCTCCTTGACATATATTCACGGAGCGATATCACCGCGTTGGCGAAAGATAAAGCCTATGCACAGATACAT CTAGAAGAAATAAGCATCCATCAGGCGTTGCAGCTGGGACAAGATGCAAACTCAAATTATGGAATGTACAATGGCCAAAGATGTCACATGTGTTTGAAAT CTGACCCTCTACACAAAGTGATGGAGCGACTCGCGACTCCCGGGATCAGAAGACTACTGATTGTCGAGGCCGGGAGCAAGCGAGTCGAAGGGATCGTCTC ACTGAGTGATGTATTCAAGTTCTTGCTTGGTTGA
AA sequence Show only first row Show all	>Lus10029909 pacid=23159777 polypeptide=Lus10029909 locus=Lus10029909.g ID=Lus10029909.BGIv1.0 annot-version=v1.0 MFAAGSEAGHDGLGVVPMRFVWPYGGRNVFLSGTFNGWTDRIPMSPMEGCPTVFQVICSLTPGYHQYKFIVDGEWRHDEHQPFVSGSYGVMNTVFLPREP DVVPATYSPRTPGRSNMDLDDVFVRSDVVQGITNADLEVSRSRIFAFLSTHTAYELLPESGKVIALDVKLPVKQAFHILHEQGVPVAPLWDFSKGQFVGV LSAMDFILILRELGNRGSNLTEEELETHTISAWKEGKFHLSRQIDGTGRSYPRHLIHAGPYDSLKDVSLKILRGNISTIPIVHSASQDGSFPQLLHLASL SGILKCICRHFRHSASSLPVLQQPICSIPLGTWVPKIGESNARPVAVLRPNATLGAALSLLVQADVSSIPIVDGNDSLLDIYSRSDITALAKDKAYAQIH LEEISIHQALQLGQDANSNYGMYNGQRCHMCLKSDPLHKVMERLATPGIRRLLIVEAGSKRVEGIVSLSDVFKFLLG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Lus10029909 [exp]	0	1
AT3G47890			Ubiquitin carboxyl-terminal hy...		Lus10042186 [exp]	2.8	0.8993
AT5G16300			Vps51/Vps67 family (components...		Lus10041337 [exp]	8.8	0.8750
AT5G11040		AtTRS120	TRS120 (.1)		Lus10013164 [exp]	17.3	0.8495
AT3G01810			unknown protein		Lus10037001 [exp]	17.7	0.8252
AT5G46210		CUL4, ATCUL4	cullin4 (.1)		Lus10023305 [exp]	18.5	0.7975
AT3G59770		AtSAC9, SAC9	ARABIDOPSIS THALIANA SUPPRESSO...		Lus10043474 [exp]	20.8	0.8468
AT2G35110		NAPP, GRL, NAP1	NCK-ASSOCIATED PROTEIN 1, GNAR...		Lus10038353 [exp]	21.9	0.8428
AT1G50120			unknown protein		Lus10040977 [exp]	25.3	0.8338
AT2G35110		NAPP, GRL, NAP1	NCK-ASSOCIATED PROTEIN 1, GNAR...		Lus10036217 [exp]	26.0	0.8362
AT4G31480			Coatomer, beta subunit (.1.2)		Lus10031570 [exp]	28.6	0.8358

Compare expression of checked genes

Lus10029909 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.