Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05380 402 / 9e-125 MYB ALY2, ATALY2 ARABIDOPSIS THALIANA ALWAYS EARLY 2, ALWAYS EARLY 2, DIRP ;Myb-like DNA-binding domain (.1.2.3.4.5) AT5G27610 342 / 2e-102 MYB ATALY1 ARABIDOPSIS THALIANA ALWAYS EARLY 1, ALWAYS EARLY 1, DIRP ;Myb-like DNA-binding domain (.1) AT3G21430 277 / 5e-78 MYB ATALY3 ARABIDOPSIS THALIANA ALWAYS EARLY 3, ALWAYS EARLY 3, DNA binding (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004489 [exp] 1432 / 0 AT3G05380 558 / 0.0 ARABIDOPSIS THALIANA ALWAYS EARLY 2, ALWAYS EARLY 2, DIRP ;Myb-like DNA-binding domain (.1.2.3.4.5) Lus10033961 [exp] 262 / 6e-73 AT3G21430 941 / 0.0 ARABIDOPSIS THALIANA ALWAYS EARLY 3, ALWAYS EARLY 3, DNA binding (.2) Lus10002879 [exp] 174 / 3e-44 AT3G21430 764 / 0.0 ARABIDOPSIS THALIANA ALWAYS EARLY 3, ALWAYS EARLY 3, DNA binding (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G020500 [exp] 656 / 0 AT3G05380 807 / 0.0 ARABIDOPSIS THALIANA ALWAYS EARLY 2, ALWAYS EARLY 2, DIRP ;Myb-like DNA-binding domain (.1.2.3.4.5) Potri.005G029000 [exp] 488 / 4e-156 AT3G05380 813 / 0.0 ARABIDOPSIS THALIANA ALWAYS EARLY 2, ALWAYS EARLY 2, DIRP ;Myb-like DNA-binding domain (.1.2.3.4.5) Potri.008G216600 [exp] 274 / 7e-77 AT3G21430 1006 / 0.0 ARABIDOPSIS THALIANA ALWAYS EARLY 3, ALWAYS EARLY 3, DNA binding (.2) Potri.010G023201 [exp] 267 / 1e-74 AT3G21430 939 / 0.0 ARABIDOPSIS THALIANA ALWAYS EARLY 3, ALWAYS EARLY 3, DNA binding (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06584 [flax] [poplar] DIRP DIRP
Representative CDS sequence Show only first row Show all	>Lus10029910 pacid=23159774 polypeptide=Lus10029910 locus=Lus10029910.g ID=Lus10029910.BGIv1.0 annot-version=v1.0 ATGGCACCAGCTAGGAAAATTAGTGTTGACAAGCATTTTTCGAAAGAGGTATCTCGTGAAAAGAAGGTTAGGAGCTGGGACAAGAATGCAGAGCAGAAGA GGAAATCTGCATATAAGTTGGGGCCACCGTGGAGTGAAACTGAGATTCAGAAGTTCTACAAAGCCTATCGTAGACATGGGACAGACTGGAAAAGGGTGAT TGCTTCTGCTCCTGTTAAGCTGTTCATTACCGGTCATTATTTATGGTACTCCGGTTCCACACAATGTTCGTTATTTGAGCTGCTCATTCTTGTTTATGTT CAGGTTGCTGCTGAAGTTGGTACCCGATCTGTGGAAATAGTGGAGGCCCTTTACAATTTACATCGGGCATACTTATCCCTACCTGAGGGGATAGCTTCAG TGCACGGCCTTATAGCAATGCTTTCGGATCATTATAGTGTTCATCAGGCGCCAAGGGGCAGGGAAGCAGAAGACAGTGGTGTGCCACTTGTATCCCACAA ATCTCTCAAACGCAAGAGAGTGAAAGTCTCGATGAGCGAGCCGGTAGACCGCCCTGTTTCAACATCAACAGATGGATGCATGTCACTCTTAAAGAGAGTA CGTTTACTTGGTGGTCAGCCTCGTGTAGTTGGGAAAAGGACACCCCGTTTTCCTGTTGGACATTCATTCACCAGAGACAATCAGAGGAATCATGGTTTCC AAAACCGGAAGTCACACTTTGTTTCCAAGGAAGAACAGGTGTCTGGCTCGTCTCGAGAAAAGCTCTGTGATGCTAGAAGTAAGGGCAGTAACAATCCTGC TGCCTATGATGGAGATGCAAACTTGCGGGATGTTGATTGTGTTGACCTTGCTAATATTTGTAAAAAGGGGAAGAAGATTCATGGGAAGAAAATGAAAGTT GGGGTGACGGAGCTTAAAAAGCTTGATGACAGTGAAGGTCAGTTGTGTGGCTTGAACAGAAATGTTGACACAAAGGTTGTAAAAGAAAAGGTGAAAGTGA CTTCTCCTACTGGCGAAAGCAGCAGCAAGAAACTTTTGTCTGGAGATGAATTCTCTGCTCTGGATGCGTTGCAAACATTGGCTCATCTCTCTGTGATGGA ATCTGAGTATTCTGTCCAGCCGAAGGAAGAAAAAACTACAGTCCGCGAAGACGACAAAATAGCTTCAATTCCACAAACTACGTGTGCCAGCCATGGCACT ACCGAAATCCCTCCCATGAAGGAAGCTCTACCCGACATGGTAACCGGAGTTGAAGCTACCACCTCAAGGAAGCCAAAGACAGGAAGGATCGCACCGATTG ATGCTACACCTGATACAGAGGCCAAGAAGAGGAATGGACCCTCAAATGGTAATACCCTGAAGAGGAAACGCCAGTCTTCGGTATCAAGAGATTCGCTTGG GGAGGAAAAGTTGCCTGCTAAAGAGGAACAACCTAGTGAAGTGCCTGCTCCTTCCGGACAATCCAAGACATGTTTGGATAACAGTGTTGATCAAACAAAT GTAGTAAAAAGTCAAGCCAGTTCGCCGTTGCCTTCAAGAACAAGTAAACGAAAAATTAAAGCTAGAGTATCTAATCCAAAGGAAGAGTTTCCTTGTTTCC TTTCTCCTAAGCTTCGCAGATGGTCTAGATTCGAATGGTTTTGTAGCGCAATTGACTACCCTTGGTTTGCGAAACGAGAGTTTGTCGAGTACTTGAATCA CGTCGGGCTTGGCCACATTATTACTCTCACTCGCGTCGAATGGGGTGTTATAAGAAGTTCTCTTGGAAAACCTCGGAGGTTCTCCCAGCATTTTCTCCAG GGTGAAAGAGGGAAACTTCAGCAGTACCGTGAGTCCGTGAGGAAACATTACAGTGAGCTCCGTACCGGCATCAGGAAGGGACTTCCGACAGATTTAGCAA GGCCTTTGTACGTCGGGCAACGTGTCAATGCTATTCATCCGCAGAGTAGAGAACTCTATACTGGGAGAGTTTTTACCGTTGATCATGACGAATGCAGAGT GCAGTTTGACCAACCGAAGATTGGAGTTGAACTCGTTAAGGATATTGACTGCATGCCTTTTGATCAAATGGAGAACATGCCCGAGGCTCTTAAGAAGCAG AAGTACTTTGATGTTTCGAAGGAAGTTCAAATCAATGGGCATCCGAATACTCGAAGGCTCGCCTTAGGTACTGGACCGAGTCCAGAAAACGCCAGAGTAA ACCAGGCTCAGGTGGTCTGTTCAGAAGCATTGAGTGCGAGGCAAAGCCATACCCAGCCAACAAACCAGGTACTACACTGGTTTAACTCGGGCAACTCCAG TTTATTTACAGCCATGGAAGAAGGTCCATGCCAGGGTTCCTTTGCTTCTCAAGAGTTGGGATCCGCTGTAGTTGAAATCGTACAGAGATCGAGACAACAA GCGCATAAGATGGTTGATGCTGCTCTCCAGGCATTGTCATCCGAGAAAGAAGGGGCAGATGCTTTCGCAACAGTCAGGGAGGCTGTAGATCGTGTGGACA TATCTCGAGGTTTACCAGAGCCTCGACAACTAGTCACTAATGGCAACGATTCGCTAGAGTCCCACGGGACTTCCTCCTCTGCAGCTTCATCTTCCCCATC TGAGCTTATGACTACATGTGTTGCTACTTTACTCATGATCAAGGTAACCAACGATGAACCTTTGAACGATACTGTTCTCTTCCAACGTTTGGATCCTAAC TTGGAGCTATTATCTTTTGTTTCTCGTGGCATGAAGATGTGTACCGAGCGACAGTATCCTCCTTCAGATGTGGCTCAGATGATAGATTCTGCGGTGACAA ACTTGCGACCTTCGTGCTCCCAGAATCTTCCAATATATCGAGAGATACAGACATGCATGGGGAGAATCAAGACTCAGATATTAGCGTTGGTACCGACATG A
AA sequence Show only first row Show all	>Lus10029910 pacid=23159774 polypeptide=Lus10029910 locus=Lus10029910.g ID=Lus10029910.BGIv1.0 annot-version=v1.0 MAPARKISVDKHFSKEVSREKKVRSWDKNAEQKRKSAYKLGPPWSETEIQKFYKAYRRHGTDWKRVIASAPVKLFITGHYLWYSGSTQCSLFELLILVYV QVAAEVGTRSVEIVEALYNLHRAYLSLPEGIASVHGLIAMLSDHYSVHQAPRGREAEDSGVPLVSHKSLKRKRVKVSMSEPVDRPVSTSTDGCMSLLKRV RLLGGQPRVVGKRTPRFPVGHSFTRDNQRNHGFQNRKSHFVSKEEQVSGSSREKLCDARSKGSNNPAAYDGDANLRDVDCVDLANICKKGKKIHGKKMKV GVTELKKLDDSEGQLCGLNRNVDTKVVKEKVKVTSPTGESSSKKLLSGDEFSALDALQTLAHLSVMESEYSVQPKEEKTTVREDDKIASIPQTTCASHGT TEIPPMKEALPDMVTGVEATTSRKPKTGRIAPIDATPDTEAKKRNGPSNGNTLKRKRQSSVSRDSLGEEKLPAKEEQPSEVPAPSGQSKTCLDNSVDQTN VVKSQASSPLPSRTSKRKIKARVSNPKEEFPCFLSPKLRRWSRFEWFCSAIDYPWFAKREFVEYLNHVGLGHIITLTRVEWGVIRSSLGKPRRFSQHFLQ GERGKLQQYRESVRKHYSELRTGIRKGLPTDLARPLYVGQRVNAIHPQSRELYTGRVFTVDHDECRVQFDQPKIGVELVKDIDCMPFDQMENMPEALKKQ KYFDVSKEVQINGHPNTRRLALGTGPSPENARVNQAQVVCSEALSARQSHTQPTNQVLHWFNSGNSSLFTAMEEGPCQGSFASQELGSAVVEIVQRSRQQ AHKMVDAALQALSSEKEGADAFATVREAVDRVDISRGLPEPRQLVTNGNDSLESHGTSSSAASSSPSELMTTCVATLLMIKVTNDEPLNDTVLFQRLDPN LELLSFVSRGMKMCTERQYPPSDVAQMIDSAVTNLRPSCSQNLPIYREIQTCMGRIKTQILALVPT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05380	MYB	ALY2, ATALY2	ARABIDOPSIS THALIANA ALWAYS EA...		Lus10029910 [exp]	0	1
AT5G06350			ARM repeat superfamily protein...		Lus10029399 [exp]	2.0	0.9228
AT2G38770		EMB2765	EMBRYO DEFECTIVE 2765, P-loop ...		Lus10016352 [exp]	7.3	0.9237
AT4G19610			nucleotide binding;nucleic aci...		Lus10040636 [exp]	7.7	0.9100
AT1G05830		SDG30, ATX2	SET DOMAIN PROTEIN 30, trithor...		Lus10025508 [exp]	10.6	0.9121
AT1G79150			binding (.1)		Lus10029032 [exp]	10.7	0.9154
AT4G24270		EMB140	EMBRYO DEFECTIVE 140 (.1.2)		Lus10005168 [exp]	15.1	0.9041
AT1G16280		SWA3, AtRH36	SLOW WALKER 3, Arabidopsis tha...		Lus10042754 [exp]	16.4	0.8666
AT1G34360			translation initiation factor ...		Lus10032318 [exp]	17.9	0.8585
AT1G33410		NUP160, SAR1, A...	ARABIDOPSIS NUCLEOPORIN 160, S...		Lus10038728 [exp]	18.7	0.9009
AT1G10490			Domain of unknown function (DU...		Lus10005792 [exp]	19.2	0.8997

Compare expression of checked genes

Lus10029910 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.