Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67500 1394 / 0 ATREV3 recovery protein 3 (.1.2) AT5G63960 292 / 3e-81 EMB2780 DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases (.1.2) AT5G67100 117 / 5e-26 ICU2 INCURVATA2, DNA-directed DNA polymerases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033513 [exp] 311 / 3e-87 AT5G63960 1785 / 0.0 DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases (.1.2) Lus10020862 [exp] 223 / 5e-59 AT5G63960 1218 / 0.0 DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases (.1.2) Lus10004489 [exp] 207 / 6e-54 AT3G05380 558 / 0.0 ARABIDOPSIS THALIANA ALWAYS EARLY 2, ALWAYS EARLY 2, DIRP ;Myb-like DNA-binding domain (.1.2.3.4.5) Lus10019338 [exp] 111 / 6e-24 AT5G67100 1751 / 0.0 INCURVATA2, DNA-directed DNA polymerases (.1) Lus10009366 [exp] 110 / 1e-23 AT5G67100 1807 / 0.0 INCURVATA2, DNA-directed DNA polymerases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G022200 [exp] 2197 / 0 AT1G67500 1426 / 0.0 recovery protein 3 (.1.2) Potri.005G065800 [exp] 320 / 4e-90 AT5G63960 1817 / 0.0 DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases (.1.2) Potri.007G045300 [exp] 108 / 3e-23 AT5G67100 1734 / 0.0 INCURVATA2, DNA-directed DNA polymerases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0194 [flax] [poplar] DNA_pol_B-like PF00136 [flax] [poplar] DNA_pol_B DNA polymerase family B CL0219 [flax] [poplar] RNase_H PF03104 [flax] [poplar] DNA_pol_B_exo1 DNA polymerase family B, exonuclease domain
Representative CDS sequence Show only first row Show all	>Lus10029911 pacid=23159708 polypeptide=Lus10029911 locus=Lus10029911.g ID=Lus10029911.BGIv1.0 annot-version=v1.0 ATGACGGATTCGCAGTCGAATTCCAAAGTCTTCAGCGTCCGGATCGTGTCGATTGATTACTACATGGCGCCGCCTGTCCAAAGAGTCGATGCCTGCTACA GTAGCTTTCAAGGCGGCAACGTGAACGAGGTTCCTGTTATACGTGTTTATGGTTCCACTCCTGCTGGACAGAAGACCTGCTTACACATTCACGGTGCGCT TCCCTATTTATACGTACCTTGTTCTGATATTCCACTAGATCTTCTGCAAGGAGGTGATGCATACATTAGTCAAGTGTCTTTTGCCCTTGAGAAAGCTTTG AAGCTTAGAGGTAATGCGGGTTCCAAAAGGCAGCATGTGCATTGCTGCACTCTTGTGCGGGGGAAGAAGTTTTATGGTTACCATTCATCCGAGGAGATGT TTGTCAAGATATACCTATATAGCTATTATCCACATGATGTGTCTCGTGCTGCGAGTCTTCTTCTGGATGGTGCAGTGCTTGACAAGTGCTTGCAGCCTTA TGAATCTCATATTCCTTATATTCTTCAGTTTCTGGTTGACTGTAACTTATATGGAATGGGGTTTGTGCATGTATCAAGAGTGAGGTTTCGTCATCCAGTT CCAGATACTTTTAGTAAAAGAAAATCTAATCAGAATGCTCAAGGAAGCACGGAGACGGAGGTATCAAGATCAGGTCATTCTGGGGCAGATTTGAGAACTA GTCAGAGTTTGGAGTCTCCAGTTTGGATATCTTCAACAATTCCCGGTGGTTGGACATGGCAAACTTCGTCTGAATATGGCACCCCATCAGATCCGTATAC TCACCATGTCAAAAGACAAACTGTTTGTGAACTGGAAGGAGATACAACTGTTGATGATATTCTTAATCAGCAATTGAAGCTATATTCTTCCCTCTCGCAA ACAGGGTCAGAGGCGAAAATGGTGCAGTCACTAATACCTATTTGGGAGGAAGAATATGAAAGAACTGGCATGCAAGAGGCAGCGATGCCTCCTGATCCTG GCAAACCACTTCCCCAAGATGTTCTTAATGCATTGTCACACAGTCTTGAGCTTAACAAAAAATTGGTGAAGTTGGTCTGTAAAGCTGAAGATGATTCAAT GTTGAAGAATACCGAGGTTGATCCTCCTTCAGTGACATTTGTGGATGAAGAAAAGTTGGTTGAACTTGGTAACACTGGTGCTGATGATATTGGTAAAGAG AACTCCAGGGCTTCAATGACCCAAGAAAATATCGAAATGCTGTCTCCACAAGATTCAATGTGTCGGGAAGAACTCTTTCAACCACCTACAGAAGGGAAGT ATGGATGCTTAGGATCACTATCAGCCGATGAAGTACAGTCATTAGAAACACTTGGACTGGAATCCAAGGTTACAGATACAGAAGCTTTGGACCTGCTAAA GTGGCTTGCGTCATCACAGGCTGCCGAAGAGATAAACTCTGATGATGAACTTGTTCGCGAGACCATTCTGAGTCCTCTTGTGCCTTCAGCAACCCTTGAT AAGGTGCTGGAAAGAGCTAATCTGGACTACGAGAGTGCGTCCCAGAGAGAGTGTCAGGATATTATTGATACAGTTGAGGTCTTTGTTGAACATGATGGAT CAAAGGAGAAACCTCTTCATTATCAAGAGCATAATTTTTGCTGCACACCTGAAGAAAAGATATCAAAGGTTGATGCGTTTCATTCATCATCTTCTGCATC ACCTAAAGGTCTATCCAAGACAGAGAAAAGAGGAACATCTGATTCATATCCTATACGTAAGGAATTGCAGAACAGCCGCTCAATTTTGACGAAAAAAAGG AAGAAGTCTCTATGGGGCACTCTGCCTTTCTCAGCCACAAAATCTTCAAATAATATTTCTGCAATGCCCAACTTATCCACTCTGCCTGATAGCGAATACA AATCTGAAAAAGAGGGAAGAGCATGTGCTAATGTTTCCCCCAATGCCAATCAAACACCTACATTAGGGGAATGTTCGGTACGAGACCTGATGCGAAAGAA GCGCTGCCACCAAATTTCTCAGCAGAATTCTGCAATCTTTGACATCAAGAAAGGTTTTTCTGATTTCCGTATGCAGTTGGATAATGACCTCGGTAAGAGT TCCGTTTGGGCTGTGGATACTAGTTTGTCAGTTGTAAAAGAGCCCAATGACCTCTTGCCAAACATTGGAAACCCTCAAGTACTGGATTCAGACAAAGACA ATATGCACTGTGCATCCAATGGTTTGAAGCAGGCTCCATCATTATTTGGAGGTGAAAGGTCCGAGCACACGACCCCTGAAGTCGTAGCTTCTGATCTTCT CAATTATGTGCCCGATTCACCAGATAATGGGCTGAACGAGTATACAAGCATGTCTGATCTAAGACTACAGAAAATGGAGGGCAGCACTGCTGGTTCAAGC TGTTTGTCGGTTGCTCATATTGAGCTTGAGAATCATGGAACAGTTGGCATGAAGGATAGAGGTCCAACTAAAGGCAGAATTTATGACAGAAAATTATTGG AAAAAAGTACTAAAAATGCTATTTATAAGGAAGAGTCGGTGGATGCGACAATTTTTACATGTGAAGCAGTTTGTTCTGCTGCTTTGAAACATGGGAGTTA TGGTGTTTCTGCATATGCTAGCTCAGCGTCCAAGGGTGTCAATGTTGAAAGCGAACCTACAGACCTGTACAGAATGACACTCAGGAAGAAACCTCCTGCA GTAGACTGGAAAGAGGGACCATCTGAAATTGCTTCATTTCCTCTTACTTTATCTGCTCACCCTTTTATTCCCGGCGGGAAAAGAGATGGTAAATCAGTAG ATAAACTTATTCCTTTCTTTGAAAGGGGTCATAAAAACAAGATAAGGCATCAGTCACGTAGTGGTATGGATGTTGATCGAGAAGCTGTGAAAGGTGTCCC CTCTTACGATCAAAATGATGGTTCAGTCTTGTATCTTCTGACACCGGTTTTTTCACCACCTTCTCGAGATGTTGTATGCAGATGGTTGATGTATGAGAAA GCAGCTATTGCAGAGAATGATCCAAAAAGTTGTTTACATATAGACACTTCTGAGATTCCACTTCAATCTAAATCTGCATCTCATTTAACATCCTCGCTCA ACCAAGTACAGAAAGAAACAACTGACGACCTTGGCTTGGAGCATCCCCTTCAAGAGAAGCATCAAGAGTTATCTCAGAGTGAAGGAAACATGAGAGATGC ATCTCAAATATCAGGACCTGATGGCAGATCAGGACCTACTCCTCTTAGTCAAATTGGATTTCGGGATCCTGCCAGCACTGGCGGTGGACAACAGTTGACC TTATTGAGTATGGAGGTTCAGGCCGAATCTAGGGGCGATCTCAGGCCAGATCCTCGTTTTGATGCAGTAAATATAGTAGCTCTTGCCTTTCAGGATGACG GTGATTGTGTTTCTGAATTTTATGTGCTTGTGCGGAGTAACTGTGAATCATCTCGGGGGTACTCTAGTGGGATATCTGGTCACAAGGTTATTGTGTTCCC TGAAGAGAAGTTGTTATTTAAACATCTTATTACACTTGTCCGCTCGTTTGATCCTGATGTTCTTATTGGATGGGACATTCAAAGTGGTTCTATTGGTTTT TTGGCTGAGAGGGCTGGACATCTGGGTCTTGGTTTACTTAGGAACATTTCCAGGACTCCATTCGAAACAGAGAAGGACACAGACATTGAAGTTTCTAATA AGAGTCTTCCTGAAACTTCACTCCTTGAATCTTTAGCTGCGGGATCTGAATTAGTAGAAGATGCTATAATAGAGGATGAGTGGGGCCGAACGCATGCCAG TGGTGTCCATGTTACGGGTAGGATTGTCTTGAATGTGTGGCGACTCGTACGGAGTGAAGTGAAACTTAACTTGTACACGATTGAAGCTGTTAGTGAAGCA GTTTTGAGGAGGAAAACCCCGTCAATTCCATACAAAGTATTAACCAGATGGTTTGCTAGTGGCATAGGGCGAGGGAGGTATAGATGCATCGAGTTTCTCG TACAGAGAGTGAATCTGAATCTGGAGATTGTAGACCAACTTGATATGGTGAACCGTACCTCAGAACTGGCACGTGTGTTTGGTATAGACTTCTTTTCTGT CCTCTCCCGTGGTTCTCAGTACCGTGTTGAGTCTATGCTCCTCAGATTGGCTCATACACAAAACTATATTGCCATTTCTCCTGGAAATCAACAGGTTGCT TCTCAACCAGCCATGGAGTGTCTCCCTCTCGTAATGGAACCAGAATCTGGCTTTTATGCAGATCCAGTGGTTGTCTTGGATTTCCAGTCTCTGTATCCAT CAATGATAATTGCTTACAATCTTTGCTTCTGTACGTGTCTTGGGAATGTTGAACCATCAAAGGCAAATACCCTGGGGGTCACTTCATTTTCACCAGATCC GCAGGTTTTGCAGAGCTTGCTGAATGAGTTGCTTCTCACTCCAAATAGTGTCATGTATGCTCCTTCACAGGTTCGCAAAGGGATTCTGCCCCGGTTATTA GAGGAAATATTGTCTACCAGGATAATGGTGAAACAAGCGATGAAGAAGTTGGGTCCTGACCAAAAAATTCTTCACAGGATTTTCAATGCAAGACAACTTG CTTTAAAGCTGATTGCAAACGTAACTTATGGGTATACAGCTGCTGGATTTAGTGGCCGCATGCCTTGTGCAGAGATTGCTGACAGCATAGTCCAATGTGG CCGTAGCACTCTGGAAAAGGCTATTGCATTGGTAAATAACAACGAGAATTGGAAGGCTAGAGTTGTCTATGGTGATACCGACAGCATGTTTGTTCTTCTA AAGGGACGCACGGTAGCAGAGGCTCACCGGATTGGGAACGAGATAGCATCAGCTGTGAGTGCCATGAACCCACATCCGGTCACCTTAAAAATGGAGAAAG TGTACCAACCGTGCTTCCTTCTCACTAAGAAACGCTACGTTGGCTACAGCTACGAGAGAGCTGACCAGACCGAACCAGTCTTCGATGCCAAGGGCATCGA GACAGTTCGTCGAGACACCTGCTCCGCGGTTGCCAAGATGATGGAGCAATCCATAAGGCTCTTCTTCGAGCAACAAGACATCTCTAAGGTGAAAGCATAT TTGTACCGACAATGGACTCGAATCCTCGCCGGTAGATTCTCTCTACAAGACTTCATATTTGCAAAAGAGGTTCGGTTAGGCACTTACAGCACTAGAACAA CTTCCTCCCTCCCGCCAGCAGCCATAGTAGCTTCAAAAGCAATGAGGTCCGATTCACGAGCAGAGCCACGCTACGGGGAGCGAGTGCCTTACGTGGTGAT CCACGGGGAGCCAGGAGCTCGCCTGGTCGATATGGTCGTCGATCCGCTGCAACTTCTGGATCTAAACTCCCCTTTCAGGTTGAATGATGTCTACTACATC ACCAAGCAGATCATCCCGGCCTTGCAAAGAGTGTTTGGACTTGTTGGTGCCGATCTAAACCGGTGGTTTTCGGAGATGCCTCGTCCCGCCAGGGGAAGTT TGGCCAAGCATCGCCCACAGTTGTTTGGTCCGAATCAATACAAGACGAGGATCGACTTTTACTATCTGTCTCAGCATTGCTTGATCTGTGGGGATTTGGT CCGTTCCTCGGCGCATGTTTGTGGGAAGTGTTCGAAGAATGAAGCGGCTGTTGCTACGGCTGTGATTGGAAGGACTTCCAAGCTGGAAAGAGAGATGCAT CATCTTGCTGCTATATGCCGGGAATGTGGAGGCGGGGATTGGGTGGTGGAGAGCGGGATCAAGTGCAATTCTCTGGCGTGCTCAGTGTTCTACGAGAGGA GGAAAGTTCAGAAGGAGCTTATGGGTCTGGCCGCCGTTGCAAGTGAAAAAGGTATGTACCCCAAGTGTATGGTAGAGTGGTTCTGA
AA sequence Show only first row Show all	>Lus10029911 pacid=23159708 polypeptide=Lus10029911 locus=Lus10029911.g ID=Lus10029911.BGIv1.0 annot-version=v1.0 MTDSQSNSKVFSVRIVSIDYYMAPPVQRVDACYSSFQGGNVNEVPVIRVYGSTPAGQKTCLHIHGALPYLYVPCSDIPLDLLQGGDAYISQVSFALEKAL KLRGNAGSKRQHVHCCTLVRGKKFYGYHSSEEMFVKIYLYSYYPHDVSRAASLLLDGAVLDKCLQPYESHIPYILQFLVDCNLYGMGFVHVSRVRFRHPV PDTFSKRKSNQNAQGSTETEVSRSGHSGADLRTSQSLESPVWISSTIPGGWTWQTSSEYGTPSDPYTHHVKRQTVCELEGDTTVDDILNQQLKLYSSLSQ TGSEAKMVQSLIPIWEEEYERTGMQEAAMPPDPGKPLPQDVLNALSHSLELNKKLVKLVCKAEDDSMLKNTEVDPPSVTFVDEEKLVELGNTGADDIGKE NSRASMTQENIEMLSPQDSMCREELFQPPTEGKYGCLGSLSADEVQSLETLGLESKVTDTEALDLLKWLASSQAAEEINSDDELVRETILSPLVPSATLD KVLERANLDYESASQRECQDIIDTVEVFVEHDGSKEKPLHYQEHNFCCTPEEKISKVDAFHSSSSASPKGLSKTEKRGTSDSYPIRKELQNSRSILTKKR KKSLWGTLPFSATKSSNNISAMPNLSTLPDSEYKSEKEGRACANVSPNANQTPTLGECSVRDLMRKKRCHQISQQNSAIFDIKKGFSDFRMQLDNDLGKS SVWAVDTSLSVVKEPNDLLPNIGNPQVLDSDKDNMHCASNGLKQAPSLFGGERSEHTTPEVVASDLLNYVPDSPDNGLNEYTSMSDLRLQKMEGSTAGSS CLSVAHIELENHGTVGMKDRGPTKGRIYDRKLLEKSTKNAIYKEESVDATIFTCEAVCSAALKHGSYGVSAYASSASKGVNVESEPTDLYRMTLRKKPPA VDWKEGPSEIASFPLTLSAHPFIPGGKRDGKSVDKLIPFFERGHKNKIRHQSRSGMDVDREAVKGVPSYDQNDGSVLYLLTPVFSPPSRDVVCRWLMYEK AAIAENDPKSCLHIDTSEIPLQSKSASHLTSSLNQVQKETTDDLGLEHPLQEKHQELSQSEGNMRDASQISGPDGRSGPTPLSQIGFRDPASTGGGQQLT LLSMEVQAESRGDLRPDPRFDAVNIVALAFQDDGDCVSEFYVLVRSNCESSRGYSSGISGHKVIVFPEEKLLFKHLITLVRSFDPDVLIGWDIQSGSIGF LAERAGHLGLGLLRNISRTPFETEKDTDIEVSNKSLPETSLLESLAAGSELVEDAIIEDEWGRTHASGVHVTGRIVLNVWRLVRSEVKLNLYTIEAVSEA VLRRKTPSIPYKVLTRWFASGIGRGRYRCIEFLVQRVNLNLEIVDQLDMVNRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYIAISPGNQQVA SQPAMECLPLVMEPESGFYADPVVVLDFQSLYPSMIIAYNLCFCTCLGNVEPSKANTLGVTSFSPDPQVLQSLLNELLLTPNSVMYAPSQVRKGILPRLL EEILSTRIMVKQAMKKLGPDQKILHRIFNARQLALKLIANVTYGYTAAGFSGRMPCAEIADSIVQCGRSTLEKAIALVNNNENWKARVVYGDTDSMFVLL KGRTVAEAHRIGNEIASAVSAMNPHPVTLKMEKVYQPCFLLTKKRYVGYSYERADQTEPVFDAKGIETVRRDTCSAVAKMMEQSIRLFFEQQDISKVKAY LYRQWTRILAGRFSLQDFIFAKEVRLGTYSTRTTSSLPPAAIVASKAMRSDSRAEPRYGERVPYVVIHGEPGARLVDMVVDPLQLLDLNSPFRLNDVYYI TKQIIPALQRVFGLVGADLNRWFSEMPRPARGSLAKHRPQLFGPNQYKTRIDFYYLSQHCLICGDLVRSSAHVCGKCSKNEAAVATAVIGRTSKLEREMH HLAAICRECGGGDWVVESGIKCNSLACSVFYERRKVQKELMGLAAVASEKGMYPKCMVEWF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67500		ATREV3	recovery protein 3 (.1.2)		Lus10029911 [exp]	0	1
AT1G05830		SDG30, ATX2	SET DOMAIN PROTEIN 30, trithor...		Lus10026725 [exp]	5.7	0.8592
AT1G63490			transcription factor jumonji (...		Lus10008495 [exp]	9.7	0.8316
AT5G27240			DNAJ heat shock N-terminal dom...		Lus10042540 [exp]	9.9	0.7753
AT5G60040		NRPC1	nuclear RNA polymerase C1 (.1....		Lus10015971 [exp]	10.5	0.8583
AT1G63490			transcription factor jumonji (...		Lus10008531 [exp]	12.0	0.8089
AT4G17610			tRNA/rRNA methyltransferase (S...		Lus10001005 [exp]	12.3	0.8440
AT5G25150		TAF5	TBP-associated factor 5 (.1)		Lus10007449 [exp]	17.0	0.8305
AT5G07400	FHA		forkhead-associated domain-con...		Lus10032515 [exp]	17.9	0.7582
AT5G56730			Insulinase (Peptidase family M...		Lus10012918 [exp]	21.2	0.8074
AT3G21480			BRCT domain-containing DNA rep...		Lus10033984 [exp]	24.0	0.7801

Compare expression of checked genes

Lus10029911 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.