Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05330 231 / 1e-71 ATN ,ATTAN A. THALIANA TAN1, TANGLED, cyclin family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004488 [exp] 524 / 0 AT3G05330 273 / 7e-88 A. THALIANA TAN1, TANGLED, cyclin family (.1) Lus10002423 [exp] 102 / 5e-26 AT3G05330 54 / 2e-09 A. THALIANA TAN1, TANGLED, cyclin family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G022600 [exp] 288 / 2e-94 AT3G05330 360 / 4e-122 A. THALIANA TAN1, TANGLED, cyclin family (.1) Potri.005G033200 [exp] 281 / 3e-92 AT3G05330 335 / 1e-112 A. THALIANA TAN1, TANGLED, cyclin family (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029912 pacid=23159641 polypeptide=Lus10029912 locus=Lus10029912.g ID=Lus10029912.BGIv1.0 annot-version=v1.0 ATGGTGGCGAGAACCCCACCAAAGCAACGGAGATTGGTTGCTGCAGCTACTGCAAATCCTCTTCCTCTTAGCCCTCGTCTCATTCGTGAGACTGTAAACA AGGTGGAGAAATGCATGGCGAGGTTGCAGGAGCTGCAGTACACGGTGACGGGAGGGAACAAGGTGATATCTTCTGGTGTGAGTTTGAGTCCCAGGAGTAC TAGAGGCTACTTGCGGACCAGTTTGAGATGCAAGCAGGAATCTTTGAGAATAAAGAGCTCTGCATCGAAGAAATCCCCCGTTGGGAAACTGCCACAAGCT TCCATAGGGGAATGGAGGAGGATGTCGTTACCAGCAATGTTGCTAGGGGAAACAATGGGGGAAATCCTGCAAGCAAGCCAATTCACTAAAGAGATCGTTG CATCAGTCGGAGGAACCACCAATTTCACCGATGATGAACCAAAAACTCCATTGACGACGACACAGCAAAGAAGAAGGCCGGAAAACAACCCCTCTGCCCT CAAATCCAAACGCCACAGGGAGAAGAAGCAGAACCAGCAGCTCAGATTCGGATCGGCTCGATCCGACTCGTCTAGTTCACCCGTTCACTCGAGCCAGCGG GTCCGGTCAAGGATCAACTTCAGGGTTTCATCGCCGCCGAAGATAAAGTCGGCGGAGAAGAAGATAGAAAAGGAGAATGGTAATAACGTAAGTGCTAACA GAGTTTCTCCAAGGCACAAGCCATGGGCGAAGAAAGCTGTCCTGTTTCCGAATCCTGTATTTCTCAGTTCATCGCCGCCGAGAACCGATCGGGAAGGGCA GGGGGGTGATCGTCGTCGTCATCCGACGACTCCGCATAAATTTTTAATAAAGTCGCCGGTGAAAGTTAGGCCGAAGTTTCCGGTGGCAGTATCGCCGACG AAGGGGAGGAGCGGAGGTGGTGTGGTGAGTAAGAAGGAGTCGTCGTTGTCGCCGGCGAAGTTTGCGGCGAGTGCTGCTTCGAAGCTGAGGCGGTCGTTCT CGCCGTCGAGGATTGCTAACAGATTGGTGTCGCTTTCGCCGTTGAAGGGGAGGAGGACGAAGAATGGTGATTGTTGTGAGTATGGGTTGACGGTGGCGAA TGAGAAGATTAGTGGACTGAAGCGGCGGCCGGTTATGGTGGCGGCTTCATCGTTTTCTCCCCGGAGATTCTCGATCGGGGGGAGAATCTGA
AA sequence Show only first row Show all	>Lus10029912 pacid=23159641 polypeptide=Lus10029912 locus=Lus10029912.g ID=Lus10029912.BGIv1.0 annot-version=v1.0 MVARTPPKQRRLVAAATANPLPLSPRLIRETVNKVEKCMARLQELQYTVTGGNKVISSGVSLSPRSTRGYLRTSLRCKQESLRIKSSASKKSPVGKLPQA SIGEWRRMSLPAMLLGETMGEILQASQFTKEIVASVGGTTNFTDDEPKTPLTTTQQRRRPENNPSALKSKRHREKKQNQQLRFGSARSDSSSSPVHSSQR VRSRINFRVSSPPKIKSAEKKIEKENGNNVSANRVSPRHKPWAKKAVLFPNPVFLSSSPPRTDREGQGGDRRRHPTTPHKFLIKSPVKVRPKFPVAVSPT KGRSGGGVVSKKESSLSPAKFAASAASKLRRSFSPSRIANRLVSLSPLKGRRTKNGDCCEYGLTVANEKISGLKRRPVMVAASSFSPRRFSIGGRI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05330		ATN ,ATTAN	A. THALIANA TAN1, TANGLED, cyc...		Lus10029912 [exp]	0	1
AT5G01420			Glutaredoxin family protein (....		Lus10017547 [exp]	1.4	0.9693
AT5G07670			RNI-like superfamily protein (...		Lus10031742 [exp]	2.8	0.9575
AT1G03780		AtTPX2, TPX2	targeting protein for XKLP2 (....		Lus10017715 [exp]	3.3	0.9740
AT1G18370		HIK, ATNACK1	HINKEL, ARABIDOPSIS NPK1-ACTIV...		Lus10032452 [exp]	6.5	0.9668
AT1G03780		AtTPX2, TPX2	targeting protein for XKLP2 (....		Lus10033674 [exp]	8.7	0.9643
AT1G18370		HIK, ATNACK1	HINKEL, ARABIDOPSIS NPK1-ACTIV...		Lus10042952 [exp]	8.9	0.9626
AT2G20590			Reticulon family protein (.1.2...		Lus10039890 [exp]	11.4	0.9534
AT3G09510			Ribonuclease H-like superfamil...		Lus10000349 [exp]	12.4	0.9218
AT3G10310			P-loop nucleoside triphosphate...		Lus10042045 [exp]	13.0	0.9585
AT4G17000			unknown protein		Lus10035651 [exp]	13.1	0.9554

Compare expression of checked genes

Lus10029912 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.