Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G33340 286 / 2e-92 CDR1 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) AT1G64830 265 / 3e-84 Eukaryotic aspartyl protease family protein (.1) AT2G35615 256 / 9e-81 Eukaryotic aspartyl protease family protein (.1) AT1G31450 238 / 9e-74 Eukaryotic aspartyl protease family protein (.1) AT2G28030 176 / 8e-51 Eukaryotic aspartyl protease family protein (.1) AT2G28040 172 / 2e-49 Eukaryotic aspartyl protease family protein (.1) AT2G03200 173 / 4e-49 Eukaryotic aspartyl protease family protein (.1) AT2G28010 170 / 2e-48 Eukaryotic aspartyl protease family protein (.1) AT2G28220 169 / 8e-46 Eukaryotic aspartyl protease family protein (.1) AT1G01300 144 / 3e-38 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039839 [exp] 549 / 0 AT5G33340 294 / 2e-95 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10039792 [exp] 541 / 0 AT5G33340 228 / 2e-70 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10003279 [exp] 477 / 3e-167 AT5G33340 296 / 2e-96 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10003280 [exp] 466 / 3e-163 AT2G35615 314 / 1e-103 Eukaryotic aspartyl protease family protein (.1) Lus10039858 [exp] 345 / 7e-118 AT5G33340 155 / 4e-44 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10018825 [exp] 339 / 4e-113 AT5G33340 432 / 1e-149 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10024910 [exp] 321 / 7e-106 AT5G33340 452 / 2e-157 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10024903 [exp] 320 / 2e-105 AT5G33340 449 / 3e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10022912 [exp] 316 / 5e-104 AT5G33340 450 / 1e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G114400 [exp] 311 / 3e-102 AT5G33340 475 / 1e-166 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Potri.003G087900 [exp] 277 / 4e-89 AT5G33340 430 / 8e-149 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Potri.003G105300 [exp] 250 / 2e-78 AT2G35615 414 / 2e-142 Eukaryotic aspartyl protease family protein (.1) Potri.001G306200 [exp] 184 / 3e-53 AT2G03200 501 / 1e-176 Eukaryotic aspartyl protease family protein (.1) Potri.019G002100 [exp] 173 / 2e-49 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.006G179500 [exp] 144 / 3e-38 AT2G23945 412 / 3e-141 Eukaryotic aspartyl protease family protein (.1) Potri.015G051800 [exp] 140 / 7e-37 AT3G18490 585 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.006G232600 [exp] 140 / 1e-36 AT5G10770 438 / 1e-150 Eukaryotic aspartyl protease family protein (.1) Potri.002G171700 [exp] 140 / 1e-36 AT1G01300 642 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.010G201400 [exp] 139 / 2e-36 AT2G39710 583 / 0.0 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10029913 pacid=23159825 polypeptide=Lus10029913 locus=Lus10029913.g ID=Lus10029913.BGIv1.0 annot-version=v1.0 ATGGTTGTTGCTCCAGTTGTTCACTCATCACTAGCCATAGTAGCAATCTTGTGCTGCTTCATAGCCAACTCCGAAGGCGAAAGAATCAGTGTTGGCTTAA TCCATCGTGACTCTCCTATTTCCCCTTTTTACAACCCACATGAAACCTCATTTCAGCGAATCGAAAAGGCTCTTAACCGATCAATCAATCGTATCAACTA TCTCTCTTCAGGTAATAATAACAACCTATCTGCCTATTCCAAATTGATCCCAGACAACAACGGCGAGTACCTGATGAAGTTCTCCATCGGCACTCCCCCA TTCCAAATCCTATTGATCATGGATACGGGGAGTGACGTCATATGGACAAAGTGCAGCGCTTTTCCTAATAAAGGTATCCTCTTTACCCCGGCATTATCAA GTACCTACAAATCGATGTCGTGCCCATCAAGAGATTGTGACTATCTTGGTTCTGAAGGAAGCTTCTGCAACCCTAACAACGATAATGTTTGTCATTACAA AATTATATACAATGACCAGTCTCGCACACTTGGCGACTTTGCTTTTGAAACTCTGACTATGGAATCGATGTCCGCTCCACACACCGTTGTTGTAGAAAAT ACTCTCATCGTGTGTAGCTACGACACTAAATTAACGTACCAAACAAAGAGCTCCGGCTTCGTTGGTCTTGGACGTGGGCCAGCTTCACTCATCAACCAAC TCGGCTCCTTTGTTGATTGGAGATTCTCATATTGCTTGCCCTCTTTAGATGGGGAAAGTACAATTGATTTCGGAAGAAATGTTATGGGCGATGGTGTTGT TTCAACTCCATTGATCGATCACCCGTCATCATTCGTTCTTAGGTTGGAAGCGATAAGCGTGGGGAATGTTCGAATACCATTTTGGGACTCCTTTAGTAAA GATCAGAACATCATCATCGATTCTGGTACGGTATTTACGAGGCTCCCCGACGAGTTCTTCTACCAACTGTCGTCTGAGGTGGCAAGACAGATGGTCGGGA TGAAGAGAGTTGGAAAATCATTAAGCTCATTCTTCAGCCTATGCTACAAGGTGGGTCCCGCAGATGGTCCCATTAATGCTCCTCCCATCACGATAAATTT CCTTGGTGCCGATGTGGAACTACCTTTGTCCAGCGTTTTCACTAAGATCAGCAGTAAGGTGACGTGTTTCACTTTTCTCCCGAATAACTTCGGCTTAACC ATTTATGGAAATTTCGCACAACGCAACTTTCTCATTGGATATGATCTTCAGAATAAAATTGTATCTTTTAAGCCATCCAATTGTGACCATAAGTAA
AA sequence Show only first row Show all	>Lus10029913 pacid=23159825 polypeptide=Lus10029913 locus=Lus10029913.g ID=Lus10029913.BGIv1.0 annot-version=v1.0 MVVAPVVHSSLAIVAILCCFIANSEGERISVGLIHRDSPISPFYNPHETSFQRIEKALNRSINRINYLSSGNNNNLSAYSKLIPDNNGEYLMKFSIGTPP FQILLIMDTGSDVIWTKCSAFPNKGILFTPALSSTYKSMSCPSRDCDYLGSEGSFCNPNNDNVCHYKIIYNDQSRTLGDFAFETLTMESMSAPHTVVVEN TLIVCSYDTKLTYQTKSSGFVGLGRGPASLINQLGSFVDWRFSYCLPSLDGESTIDFGRNVMGDGVVSTPLIDHPSSFVLRLEAISVGNVRIPFWDSFSK DQNIIIDSGTVFTRLPDEFFYQLSSEVARQMVGMKRVGKSLSSFFSLCYKVGPADGPINAPPITINFLGADVELPLSSVFTKISSKVTCFTFLPNNFGLT IYGNFAQRNFLIGYDLQNKIVSFKPSNCDHK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10029913 [exp]	0	1
					Lus10000400 [exp]	1.4	1.0000
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10029390 [exp]	2.0	1.0000
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Lus10026877 [exp]	3.0	1.0000
AT5G18460			Protein of Unknown Function (D...		Lus10006860 [exp]	4.0	1.0000
AT5G19580			glyoxal oxidase-related protei...		Lus10043230 [exp]	4.2	0.9620
					Lus10009372 [exp]	4.5	1.0000
AT3G45600		TET3	tetraspanin3 (.1)		Lus10023218 [exp]	4.6	0.9926
AT4G29280		LCR22	low-molecular-weight cysteine-...		Lus10015983 [exp]	4.9	1.0000
AT2G27930			PLATZ transcription factor fam...		Lus10036044 [exp]	5.5	0.9397
AT5G47550			Cystatin/monellin superfamily ...		Lus10034773 [exp]	5.5	0.9115

Compare expression of checked genes

Lus10029913 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.