Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27550 838 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G72250 495 / 1e-159 Di-glucose binding protein with Kinesin motor domain (.1.2) AT2G22610 489 / 1e-158 Di-glucose binding protein with Kinesin motor domain (.1.2) AT2G47500 316 / 3e-94 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT5G41310 315 / 6e-94 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT5G27000 315 / 1e-93 KATD, ATK4 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) AT1G73860 309 / 3e-91 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G44730 303 / 5e-89 AtKIN14h, ATKP1 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) AT1G18410 298 / 6e-87 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G63640 293 / 2e-85 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004487 [exp] 1347 / 0 AT5G27550 881 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10005582 [exp] 494 / 3e-160 AT1G72250 1109 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10013714 [exp] 491 / 1e-158 AT1G72250 1098 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10035954 [exp] 464 / 4e-149 AT2G22610 1302 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10025708 [exp] 433 / 1e-137 AT2G22610 1238 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10029865 [exp] 305 / 4e-90 AT5G27000 1014 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Lus10032264 [exp] 300 / 3e-87 AT1G63640 991 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Lus10032897 [exp] 296 / 4e-86 AT3G44730 1302 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Lus10009851 [exp] 293 / 6e-86 AT2G47500 1245 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G020700 [exp] 851 / 0 AT5G27550 862 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G030271 [exp] 840 / 0 AT5G27550 865 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.011G140000 [exp] 506 / 1e-163 AT1G72250 1201 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Potri.001G436200 [exp] 486 / 5e-156 AT1G72250 1248 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Potri.002G110600 [exp] 474 / 4e-153 AT2G22610 1057 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Potri.005G031500 [exp] 391 / 3e-128 AT5G27550 378 / 7e-124 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.013G011500 [exp] 311 / 5e-92 AT5G27000 1081 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Potri.005G021100 [exp] 308 / 3e-91 AT2G47500 1051 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.001G467600 [exp] 306 / 1e-89 AT3G44730 1266 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Potri.011G165200 [exp] 305 / 2e-89 AT3G44730 1300 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Lus10029914 pacid=23159761 polypeptide=Lus10029914 locus=Lus10029914.g ID=Lus10029914.BGIv1.0 annot-version=v1.0 ATGGAAGTTGCTCCTGAGTTGGTGGAGGAAACCACTACTTCAATGGATGAGGGGAACGTATCAAGTGGGAGTAAGGAGTTCTCCCCATCTCAGGAGCCTG CACTGCCGATATTTCAGAAAATCACCAAGTTGAGCAGTAATATTCAGAATTTGAAGAATGATCATGCAATTCTCACGGATGAAGTTAAAAAGATCACTAC AGGCTTCTTTGTCCAGCCTGAAGTTTTAAGTGCGCTTCAGCTTCTTGGTAATGAAAACGAACATCTAAAGAAGAAGTTTGTGCAAGAGTCAACTGAGAGG AAGAGGCTCTACAACGAAGTGATAGAGCTTAAAGGCAATATTAGAGTGTTCTGCAGATGTAGACCGATAAACCAATCCGAGCTTGAGAAAGGCTCCAGTA GTGTGGTCGAATTCAGTTCCTCCCAAGATAATGAGCTGCAGATTCTTTCATCCGATTCTTCAAAAAAGCAGTTCAAGTTCGACCATGTCTTTAAGCCAGA TGATAACCAAGAGGCTGTATTTGCCGAAACTAAACCCATTGTTACCTCAGTGCTGGACGGCTACAATGTCTGCATTTTTGCCTATGGCCAAACTGGAACT GGCAAGACATTTACAATGGAGGGCACGCTTGAAAACAGAGGAGTAAACTACAGAACTCTCGAGGAGCTCTTTCGGATTTCTGAAGAGCGAAAGGGTTATG TGAAATACGAGTTATACGTCAGCATGTTGGAGGTTTACAACGAGAAGCTAAGAGACCTTCTAGTCGAAAACTCCAAGGAAAATTCAAAACGATTGGATAT TAAGCAAGCTGCTGATGGAACTCAAGAAGTCCCCGGACTCGCTGAATCTCATGTCTCTAACACTGAGGAAGTATGGAAGCTCCTCAAGTCTGGAAACTGT ATTCGATCTGTCGGTTCCACAAGTGCCAACGAGCAAAGCAGCCGCTCTCACTGCTTGTTACGAGTGACGGTCAAAGGAGAGAATTTGATCAATGGGCAGA AAACAAAGAGCCACCTTTGGCTAGTGGACTTAGCTGGAAGTGAGCGAGTAGGGAAGATTGAAGTTGAAGGTGAAAGGCTGAAGGAATCCCAGTTCATAAA CAAGTCTCTCTCAGCCTTAGGCGACGTTATTTCTGCTCTTGCATCGAAAACAAGCCACATTCCATACAGGAACTCCAAGCTTACTCATATGCTGCAAAGC TCTCTAGGTGAGGAGGGTTCAAGACTGTTTCAGCGGATTAGAGCTATCATTATGCCGATTGAAGAAGAGCTAACAAATTGGGATTTGATGTTTAATGTAG GTGGAGATTGCAAGACCTTAATGTTTGTCCAGATAAGTCCTAGCTCCAGTGACCTTGGGGAGACCCTTTGTTCGCTGAATTTCGCTACCCGAGTTCGAGG AATCGAATCTGGCCCTGCTCGTAAACATGCTGATCTTAATGAACTCCACAAGTACAAGCAAATGGCAGACAAAATGAAGCATGACGAGAAGGAAACTAAG AAGTTGCAAGATACTGTCCAGTCTTTGCAGCTACGCCTTACTGCCAGAGACACCATGTTCAGAAGTCTCCAAGAGAAGGTTAGGGACTTGGAGAATCAGT TGGAGGAAGAAAGGAAAACGAGAATAAAGCAAGAAAACAGAGCTTTAGCAGCTTCAGTTCGATCTTCATCTCTCTTCTCGAAGCAACGAACATCAACGGA GAACAACACCACCATCAACAAACCACCGTTGGCTCCGCCGACGAAGCTGAGAATGCCACTCCGGAGAATCACCAACTTCATGCCCCAACAACAGCCTCCT CCCCCTGCCGCCGCCGTCAAAAGACCATCCTCTGGCGCCGGGGCGTGGAAAAGGAAGGAAAACAACGTCTTCATCAACAACAACAGCAATAACAATGCAA GGAATCTGATGAAACCGAGGAGGAACTCCGTTGCAGTGAGACCACCACCACCTCAATCTCAACATCCGTCGAATTCGGGCCTATTAGTTCGTCAGCCGAG GAGGCGGGTCTCTGTTGCTACGTACATCCCGGAACCAAGTGTGATCTCTACTCCCCGTGTACAGCAATCATCGCAGCAGTTGATCAGGGGAGGTGCGAGG AGGGGGAGGTATTCGAGCCTGTTTTCTCCGTTGCCGGAGTTGGAGATTCTAGGGACGCCTGCGGCGGCGGGGTTTAATAGTAGTAGTAGTAAGTTCATGG GGAGTCCTCCGGTGGTGCCTGGTTCGTGGAAGCCGAAGCATCCCACGGTGGTTGCTTTGCAGAAGAAGACCCTGGTGTGGAGTCCTTTGAGAGGGATGTT GAAGAACGCCGGCGGAGGAGGAGGAAGGACTAGCCGGCCGTCGTTTATTGCTGCATTGAATCAACGGAACTGA
AA sequence Show only first row Show all	>Lus10029914 pacid=23159761 polypeptide=Lus10029914 locus=Lus10029914.g ID=Lus10029914.BGIv1.0 annot-version=v1.0 MEVAPELVEETTTSMDEGNVSSGSKEFSPSQEPALPIFQKITKLSSNIQNLKNDHAILTDEVKKITTGFFVQPEVLSALQLLGNENEHLKKKFVQESTER KRLYNEVIELKGNIRVFCRCRPINQSELEKGSSSVVEFSSSQDNELQILSSDSSKKQFKFDHVFKPDDNQEAVFAETKPIVTSVLDGYNVCIFAYGQTGT GKTFTMEGTLENRGVNYRTLEELFRISEERKGYVKYELYVSMLEVYNEKLRDLLVENSKENSKRLDIKQAADGTQEVPGLAESHVSNTEEVWKLLKSGNC IRSVGSTSANEQSSRSHCLLRVTVKGENLINGQKTKSHLWLVDLAGSERVGKIEVEGERLKESQFINKSLSALGDVISALASKTSHIPYRNSKLTHMLQS SLGEEGSRLFQRIRAIIMPIEEELTNWDLMFNVGGDCKTLMFVQISPSSSDLGETLCSLNFATRVRGIESGPARKHADLNELHKYKQMADKMKHDEKETK KLQDTVQSLQLRLTARDTMFRSLQEKVRDLENQLEEERKTRIKQENRALAASVRSSSLFSKQRTSTENNTTINKPPLAPPTKLRMPLRRITNFMPQQQPP PPAAAVKRPSSGAGAWKRKENNVFINNNSNNNARNLMKPRRNSVAVRPPPPQSQHPSNSGLLVRQPRRRVSVATYIPEPSVISTPRVQQSSQQLIRGGAR RGRYSSLFSPLPELEILGTPAAAGFNSSSSKFMGSPPVVPGSWKPKHPTVVALQKKTLVWSPLRGMLKNAGGGGGRTSRPSFIAALNQRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27550			P-loop containing nucleoside t...		Lus10029914 [exp]	0	1
AT1G18370		HIK, ATNACK1	HINKEL, ARABIDOPSIS NPK1-ACTIV...		Lus10042952 [exp]	1.4	0.9872
AT1G50240		FU	FUSED, Protein kinase family p...		Lus10013766 [exp]	2.0	0.9775
AT1G18370		HIK, ATNACK1	HINKEL, ARABIDOPSIS NPK1-ACTIV...		Lus10032452 [exp]	3.0	0.9787
AT3G23890		ATTOPII, TOPII	topoisomerase II (.1.2)		Lus10019720 [exp]	3.2	0.9810
AT4G13370			Plant protein of unknown funct...		Lus10019398 [exp]	3.5	0.9767
AT1G69770		CMT3	chromomethylase 3 (.1)		Lus10014315 [exp]	3.5	0.9743
AT4G13370			Plant protein of unknown funct...		Lus10043255 [exp]	4.9	0.9759
AT3G21620			ERD (early-responsive to dehyd...		Lus10030024 [exp]	6.0	0.9754
AT3G51280			Tetratricopeptide repeat (TPR)...		Lus10028433 [exp]	6.5	0.9763
AT3G51280			Tetratricopeptide repeat (TPR)...		Lus10041886 [exp]	7.1	0.9775

Compare expression of checked genes

Lus10029914 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.