Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27560 423 / 7e-149 Domain of unknown function (DUF1995) (.1) AT5G48790 44 / 7e-05 Domain of unknown function (DUF1995) (.1) AT5G35170 44 / 0.0002 adenylate kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029929 [exp] 613 / 0 AT5G27560 425 / 5e-149 Domain of unknown function (DUF1995) (.1) Lus10004486 [exp] 322 / 6e-110 AT5G27560 252 / 1e-82 Domain of unknown function (DUF1995) (.1) Lus10007599 [exp] 50 / 3e-06 AT5G48790 413 / 3e-141 Domain of unknown function (DUF1995) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G020800 [exp] 478 / 1e-170 AT5G27560 436 / 4e-154 Domain of unknown function (DUF1995) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09353 [flax] [poplar] DUF1995 Domain of unknown function (DUF1995)
Representative CDS sequence Show only first row Show all	>Lus10029915 pacid=23159695 polypeptide=Lus10029915 locus=Lus10029915.g ID=Lus10029915.BGIv1.0 annot-version=v1.0 ATGGCTGCTTCAATCCCAAGCTGCTCATTTCACCACAGCAACTTATCACCACCATCTTCATCCCACAGCACCAGTACCACTTGTTCAACCACAGCCACTC CTTTCACCTTATCTTTCCCATTCTCATCAGCCGCTAGTAGAAAAAGCTGCGGAGGAGCTTCGTCATCAAGAATCTCCGCCAAGTTCGAGAAATTCCAGGG CGAAGAGAATCCAAAATCGCCGACTGAACAAGAAGAAGCAGCAGATGTTGAAGAAGGATCAGGAGTTGAGGCTCAGAAAGAAGAAGATGACAGCTGCCTG CCGTCAGATTTGGAAGGTGCTGTGAGGCAATCTGGGGAAGCGAGTGGCTTGTTTGTTTCTTCAGGAGGAATGAGAGCCATAGTGGAGCTTCTGATTCCGC AGCTTATGTATCTGGATGATGAAGGTGCACAGGCTGAGCTGTGGGATCTCTCCAGGGTTTTCCTTGAAACCCTTATGGAACAGACCGGTTCACAGAGGGT TAAAGCCATATATCCAGATGCTGGTGCTGCTGCAATGCTCAAGTATAGATGGAAAGAAGCAGCCTTTGGATTCGCGAGCTTAGGCGATCGGAAGCCGGTT GAAAGTGAAGATGAGATTGTGGTTATGGTTCTTCCTGACTATCAAATGCTGTCATCTGTTGAGAAAATTGCAGCTAGTCTCACCGACGATCCGCCAAGGC CGCTCATCATGTGGAATCCTCGCCTCATTAGTGAGGACGTCGGAGTTGGGATCAACGTTCGCAACCTTAGGCGTTACTTCCTGAGCACTTTCACCACGGT TTACTCGATGAAACCTCTGCCGGAAGGTGCTGTCTTTAGATGCTATCCAGGATTATGGAAGGTCTTTTTCGATGACAAAGAGAGGCCGAACAGATACCTT CTTGCGAAGGAGTTCATCCGGCGACCTGATTACGAAGAAATCGAGATAATATTTGGTAATGGCCAAGAGGAGTCTGAGCAAGGTCCATCATTCTTCAACA GAGCTGCTAGCCTTTTCTCTTCCATAAACAGATTCATGAGAGTCATATCAAAGTAA
AA sequence Show only first row Show all	>Lus10029915 pacid=23159695 polypeptide=Lus10029915 locus=Lus10029915.g ID=Lus10029915.BGIv1.0 annot-version=v1.0 MAASIPSCSFHHSNLSPPSSSHSTSTTCSTTATPFTLSFPFSSAASRKSCGGASSSRISAKFEKFQGEENPKSPTEQEEAADVEEGSGVEAQKEEDDSCL PSDLEGAVRQSGEASGLFVSSGGMRAIVELLIPQLMYLDDEGAQAELWDLSRVFLETLMEQTGSQRVKAIYPDAGAAAMLKYRWKEAAFGFASLGDRKPV ESEDEIVVMVLPDYQMLSSVEKIAASLTDDPPRPLIMWNPRLISEDVGVGINVRNLRRYFLSTFTTVYSMKPLPEGAVFRCYPGLWKVFFDDKERPNRYL LAKEFIRRPDYEEIEIIFGNGQEESEQGPSFFNRAASLFSSINRFMRVISK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27560			Domain of unknown function (DU...		Lus10029915 [exp]	0	1
AT1G32470			Single hybrid motif superfamil...		Lus10030979 [exp]	1.7	0.9580
AT1G32470			Single hybrid motif superfamil...		Lus10035374 [exp]	2.4	0.9540
AT1G80380			P-loop containing nucleoside t...		Lus10028609 [exp]	3.3	0.9326
AT5G26820		RTS3, MAR1, ATI...	MULTIPLE ANTIBIOTIC RESISTANCE...		Lus10020698 [exp]	5.9	0.9381
AT3G24430		HCF101	HIGH-CHLOROPHYLL-FLUORESCENCE ...		Lus10019395 [exp]	6.5	0.9428
AT5G46420			16S rRNA processing protein Ri...		Lus10011969 [exp]	8.8	0.8944
AT4G23890		NdhS, CRR31	NADH dehydrogenase-like comple...		Lus10001826 [exp]	9.5	0.9362
AT3G10060			FKBP-like peptidyl-prolyl cis-...		Lus10027729 [exp]	9.8	0.9416
					Lus10030090 [exp]	10.5	0.9350
AT3G45050			unknown protein		Lus10041331 [exp]	10.7	0.9367

Compare expression of checked genes

Lus10029915 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.