Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05345 277 / 2e-94 Chaperone DnaJ-domain superfamily protein (.1) AT5G23240 67 / 1e-12 DNAJ heat shock N-terminal domain-containing protein (.1) AT2G42750 61 / 8e-11 DNAJ heat shock N-terminal domain-containing protein (.1) AT2G22360 56 / 6e-09 DNAJ heat shock family protein (.1) AT4G39960 52 / 1e-07 Molecular chaperone Hsp40/DnaJ family protein (.1) AT1G80030 47 / 5e-06 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) AT3G08970 45 / 4e-05 TMS1, ATERDJ3A THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1) AT1G80920 43 / 4e-05 AtToc12, AtJ8, J8 translocon at the outer envelope membrane of chloroplasts 12, Chaperone DnaJ-domain superfamily protein (.1) AT1G72070 42 / 5e-05 Chaperone DnaJ-domain superfamily protein (.1) AT3G17830 44 / 6e-05 Molecular chaperone Hsp40/DnaJ family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004485 [exp] 468 / 8e-170 AT3G05345 287 / 2e-98 Chaperone DnaJ-domain superfamily protein (.1) Lus10029928 [exp] 352 / 1e-124 AT3G05345 205 / 1e-66 Chaperone DnaJ-domain superfamily protein (.1) Lus10000158 [exp] 237 / 2e-80 AT3G05345 102 / 7e-28 Chaperone DnaJ-domain superfamily protein (.1) Lus10040990 [exp] 64 / 1e-11 AT5G23240 442 / 8e-153 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10020749 [exp] 64 / 2e-11 AT2G42750 455 / 1e-161 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10008768 [exp] 63 / 2e-11 AT5G23240 141 / 6e-39 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10022246 [exp] 61 / 1e-10 AT5G23240 139 / 2e-37 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10023148 [exp] 50 / 9e-07 AT2G22360 675 / 0.0 DNAJ heat shock family protein (.1) Lus10000631 [exp] 49 / 2e-06 AT2G22360 672 / 0.0 DNAJ heat shock family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G021000 [exp] 283 / 2e-96 AT3G05345 288 / 1e-98 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G031466 [exp] 70 / 1e-15 AT3G05345 68 / 2e-15 Chaperone DnaJ-domain superfamily protein (.1) Potri.014G143400 [exp] 64 / 9e-12 AT2G42750 416 / 2e-146 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.001G347600 [exp] 63 / 2e-11 AT5G23240 149 / 2e-41 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.007G072600 [exp] 61 / 1e-10 AT5G23240 461 / 4e-160 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.003G031800 [exp] 49 / 1e-06 AT1G80030 607 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Potri.005G073900 [exp] 47 / 6e-06 AT2G22360 659 / 0.0 DNAJ heat shock family protein (.1) Potri.016G120000 [exp] 47 / 8e-06 AT3G08970 479 / 6e-164 THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1) Potri.002G020800 [exp] 45 / 1e-05 AT2G17880 110 / 3e-31 Chaperone DnaJ-domain superfamily protein (.1) Potri.007G094900 [exp] 45 / 2e-05 AT2G22360 688 / 0.0 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10029916 pacid=23159649 polypeptide=Lus10029916 locus=Lus10029916.g ID=Lus10029916.BGIv1.0 annot-version=v1.0 ATGGCGACCTTAGCTTTCTGCCATTCTTCTGTGCCACCGATTCTTCCTCCACTTCACAGTACCAATTTCTCGAATCCAACTCCCGGAAACACGATTCGAT TTATTCGGAGCTCCAAATTCGCACTCCGTTGCACTTCGGGCGATGGTTCTTCTTCTTCGCCCCATGCCGTTCTCGGCGTCGATCCGGGATGCTCAGCCGC CGAGCTCAAAGCCGCGTTCCGAGCGAAAGTGAAGCAGTTCCATCCCGACGTCATTGGAGACAAAGGATCCGATGTCATGATTCGCCGCGTGATTCGAGCG TATGAGATCTTATCCGATTATACCCGGTCAGAGATCATCGAAAGACAATGTATGGATCCATTTGAGAAACCAGAGTGTGAAGCTTATGATTTATTCGTCA ATGAAGTTTGTTGCATTGGCAAAGAACGAGCGCCACAAGCCTTCACATTTTCTCCATTCGGAACAGCCAGGGTGAAATCTCAAGGCTACGGTGGAGACTA CCAAGTTCAGGTGGCAGCCGGACAATGTCCAAGGAGCTGCATTCATTACGTTACACCGTCACAGAGGATCATTCTAGAGGAATCATTGGAAAGCATCCTT AATGCACACTTTGACAGCTCAGCAGAGTCCGAACTGCTGTATTCACTGATCGTGAAAGCAAGGTTCGAGAACAACCGGTTCCAGAAGCCGAAGAGCAAGG AACCAAAGACATCGACGCAGCATGTAGATTGGTATTGA
AA sequence Show only first row Show all	>Lus10029916 pacid=23159649 polypeptide=Lus10029916 locus=Lus10029916.g ID=Lus10029916.BGIv1.0 annot-version=v1.0 MATLAFCHSSVPPILPPLHSTNFSNPTPGNTIRFIRSSKFALRCTSGDGSSSSPHAVLGVDPGCSAAELKAAFRAKVKQFHPDVIGDKGSDVMIRRVIRA YEILSDYTRSEIIERQCMDPFEKPECEAYDLFVNEVCCIGKERAPQAFTFSPFGTARVKSQGYGGDYQVQVAAGQCPRSCIHYVTPSQRIILEESLESIL NAHFDSSAESELLYSLIVKARFENNRFQKPKSKEPKTSTQHVDWY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05345			Chaperone DnaJ-domain superfam...		Lus10029916 [exp]	0	1
AT3G20970		ATNFU2, NFU4	ARABIDOPSIS THALIANA NFU DOMAI...		Lus10034140 [exp]	1.4	0.9016
AT3G05000			Transport protein particle (TR...		Lus10033832 [exp]	3.0	0.8715
AT5G59610			Chaperone DnaJ-domain superfam...		Lus10016510 [exp]	3.2	0.8760
AT1G75020		LPAT4	lysophosphatidyl acyltransfera...		Lus10032727 [exp]	3.5	0.8647
AT5G52210		ATGB1, ATARLB1	GTP-binding protein 1 (.1.2)		Lus10005749 [exp]	3.7	0.8574
AT1G60430		ARPC3	actin-related protein C3 (.1.2...		Lus10018909 [exp]	4.9	0.8577
AT1G70100			unknown protein		Lus10010725 [exp]	5.5	0.8437
AT5G54590		CRLK1	calcium/calmodulin-regulated r...		Lus10043083 [exp]	6.2	0.8401
AT4G36860		DAR1	DA1-RELATED PROTEIN 1, LIM dom...		Lus10016791 [exp]	7.5	0.8294
AT4G28600		NPGR2	no pollen germination related ...		Lus10011793 [exp]	8.0	0.8367

Compare expression of checked genes

Lus10029916 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.