Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09010 1406 / 0 glycoside hydrolase family 2 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004484 [exp] 1674 / 0 AT1G09010 1183 / 0.0 glycoside hydrolase family 2 protein (.1) Lus10000159 [exp] 659 / 0 AT1G09010 361 / 1e-117 glycoside hydrolase family 2 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G021200 [exp] 1525 / 0 AT1G09010 1457 / 0.0 glycoside hydrolase family 2 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF02836 [flax] [poplar] Glyco_hydro_2_C Glycosyl hydrolases family 2, TIM barrel domain CL0159 [flax] [poplar] E-set PF00703 [flax] [poplar] Glyco_hydro_2 Glycosyl hydrolases family 2 CL0202 [flax] [poplar] GBD PF02837 [flax] [poplar] Glyco_hydro_2_N Glycosyl hydrolases family 2, sugar binding domain
Representative CDS sequence Show only first row Show all	>Lus10029917 pacid=23159769 polypeptide=Lus10029917 locus=Lus10029917.g ID=Lus10029917.BGIv1.0 annot-version=v1.0 ATGGCGATGGAAATTGGAAAAAAGGTGCTCGATTCAGGGTGGATAGCAGCTAGATCGACGGAGGTCAAGCTTACCGGAACTCAGCTCACCACAACTAACC CTCCTTCTATTGAGCCTAAGTCGCCATGGATGGAAGCTGTGGTTCCCGGAAGTATCTTGGCAACCCTTGTAAAGAACAAAGTGGTGCCTGATCCATTTTA CGGGCTGGAGAACGAGGCGATCCTCGATATAGCCGATTCGGGGAGGGAGCACTACACATTTTGGTTCTTCACGACCTTTGAGTGTAAGCTGTCAGAGAAT CAGTATCTTGATCTGAATTTCCGCGGGGTCAATTACTCTGCTGAAGTGTATCTCAATGGACACCATATGGCCTTGCCTAAAGGGATGTTCAGGCGGCATT CTCTTGACGTTACGAAAATTCTTAGTTCCGAGGGGACCAACATGCTAGCTGTTCTAGTTCACCCGCCTGATCATCCTGGAAAGATCCCTCCTGACGGCGG CCAGGGTGGCGATCACGAGATTGGAAAAGATGTCACAACACAATATGTTGAGGGATGGGATTGGATTTGTCCCATAAGGGATAGGAATACTGGCATTTGG GACGAGGTTTCGATATCGGTTACAGGGCCAGTGAAGATAATAGATCCACACTTGGTCTCGACTTTCTACGACAACTACACAAGAGTGTATCTTCACGCTG CTGTGGAGTTAGAAAACAGAAGTTCTTCCTCAGCTGGATGTACAGTGAACATTCAAGTGACAACAGAACTCGAGGGAGGTGTTTGCCTCGTAGAGCATCT TCAGACGCAGTTCCTGGCCATAGCTGCTGGTAAACGTATTCAATACTCATTTCCCGAGCTCTTCTTCTACAAACCCAACTTATGGTGGCCGAATGGTATG GGAAAGCAGGCGCTCTACAACGTCACCATTACAGCCAATCTAGAAGGACAAGGAGAGTCAGACACGTGGAACCAGCTCTTTGGATTCCGTAAAATCGAGA GTACTATCGACAGCTCAACTGGTGGAAGGTTGTTCAAGGTCAATGGGCAGCCTATTTTTATCAGAGGAGGTAACTGGATAGTGTCTGATGGATTACTACG GCTTTCTCGAAAGCGTTATCAGACAGACATCAAGTTCCATAAGGATATGAACTTCAACATGATCCGTTGCTGGGGTGGTGGGTTGGCAGAGAGGCCGGAT TTCTATCATTACTGTGACGTATATGGCATACTAGTGTGGCAGGAGTTTTGGATTACAGGAGATGTGGATGGAAGAGGCGTCCCAGTTTCGAACCCGGACG GTCCATTGGACCACGATCTCTTCCTGTTTTGTGCAAGGGACACTGTCAAGCTACTAAGGAACCATCCGAGTCTCGCTCTTTGGGTAGGCGGAAATGAACA AGTTCCTCCACCAGATATCAACAATGCTTTAAAAAAGGACCTCCAACTCATGCCCGAGTTTCAATACTCTGAGATAAAAACTCCGTCTGAGCATGATGAT TCACCCTCCGTGTCACAAAGCCTCTCTGACTATCTCGATGGCACACGAGTCTACGTGCAAGGATCAATGTGGGACGGCTTTGCTGATGGGAAAGGGAACT TCACAGATGGCCCTTATGAAATTCAAAACCCGGAAAGCTTCTTCAAGGACGACTTCTACAAGTATGGTTTCAACCCGGAGGTTGGCTCTGTAGGAATGCC AGTTGCTGCTACCATCAGGGCCACAATGCCTCCGGAAGGGTGGCAGATCCCGTTGTTCAACAAGCAAGCTGATGGTTACGTGGAAGAAGTTCCGAACCCG ATATGGAACTATCATAAGTACATTCCTTATTCCAAACCCAGCAATAAGGTCCATGACCAGATACTGCTGTATGGCGTCCCGGCAGACCTTGATGATTTCT GTCTCAAGGCTCAACTTGTAAACTATATCCAATATAGAGCATTGCTGGAAGGCTATAGTTCTCGTATGTGGAAGAAGCACACCGGTGTACTAATCTGGAA GAATCAGAATCCGTGGACAGGTCTTCGCGGTCAGTTCTACGATCATCTCCTCGACCAAACTGCAGGCTTCTATGGGTGCCGGTCTGCTGCAGAACCCATA CACGTGCAACTAAACCTTGCCACTTATTTCATCGAGGTTGTCAACACTCTATCGAAAAGTCTGTCCAATGTGGCTATAGAAGTATCGGTCTGGGACCTCG ATGGTATGTGCCCGTACTACAAAGTCCACGAAGACCTCTCGTTTCCCTTGAAGAAGACCACACGTGTGGCCGAGATGAAGTACCCGAGTTCCAAGAATCC GAAACCGGCATACTTCCTCCTCCTGAAGCTCTACAATAAGTCGGACTACAAGATCCTTTCCAGGAACTTCTACTGGCTCCATCTTCCCGGCAGCGACTAC ACCTCGCTCCAGGACCCGTTCCGGAAGAATAAGATCCCTCTCAAGCTCACAACGCAGACTTTCGTCTCCGGGAGATCCTACGAAATGGAAGTCCTCGTGC AGAACTCCTCCAAGGTGAAACAACCACACTTGACGAGTTCAACTCAGAAGAACAACTTCATCGTAGCTGATGATGATGACGGCGTGGATTACGATTTGAA CTCGGGACTGCAACTTCTTGTGCCGGATGGACATGGTAAAAAGGATGGCTTATTTGGAACGTTGTCCAGAATGTTTGGAGCAACAAAGGGATCGTCTTCT TTGAAGGTTTCATCCGAAGTGAATGGCAGCGACGTTGGAGTTGCATTCTTCCTGCAGTTCTCGGTCCATGCTGTGAAATCGCGATATGAAGAAGGCGAAG ACACGAGGATTCTGCCTGTCCATTACTCGGATAACTACTTCTCGCTTGTCCCGGGAGAGGAGATGACCGTTAAACTTTCGTTCGAGGTTCCTGCTGGTGT CACTCCAAGGCTGACTCTCCGTGGCTGGAACTACCCTGGTGGCCATACAGTTCACCATTGA
AA sequence Show only first row Show all	>Lus10029917 pacid=23159769 polypeptide=Lus10029917 locus=Lus10029917.g ID=Lus10029917.BGIv1.0 annot-version=v1.0 MAMEIGKKVLDSGWIAARSTEVKLTGTQLTTTNPPSIEPKSPWMEAVVPGSILATLVKNKVVPDPFYGLENEAILDIADSGREHYTFWFFTTFECKLSEN QYLDLNFRGVNYSAEVYLNGHHMALPKGMFRRHSLDVTKILSSEGTNMLAVLVHPPDHPGKIPPDGGQGGDHEIGKDVTTQYVEGWDWICPIRDRNTGIW DEVSISVTGPVKIIDPHLVSTFYDNYTRVYLHAAVELENRSSSSAGCTVNIQVTTELEGGVCLVEHLQTQFLAIAAGKRIQYSFPELFFYKPNLWWPNGM GKQALYNVTITANLEGQGESDTWNQLFGFRKIESTIDSSTGGRLFKVNGQPIFIRGGNWIVSDGLLRLSRKRYQTDIKFHKDMNFNMIRCWGGGLAERPD FYHYCDVYGILVWQEFWITGDVDGRGVPVSNPDGPLDHDLFLFCARDTVKLLRNHPSLALWVGGNEQVPPPDINNALKKDLQLMPEFQYSEIKTPSEHDD SPSVSQSLSDYLDGTRVYVQGSMWDGFADGKGNFTDGPYEIQNPESFFKDDFYKYGFNPEVGSVGMPVAATIRATMPPEGWQIPLFNKQADGYVEEVPNP IWNYHKYIPYSKPSNKVHDQILLYGVPADLDDFCLKAQLVNYIQYRALLEGYSSRMWKKHTGVLIWKNQNPWTGLRGQFYDHLLDQTAGFYGCRSAAEPI HVQLNLATYFIEVVNTLSKSLSNVAIEVSVWDLDGMCPYYKVHEDLSFPLKKTTRVAEMKYPSSKNPKPAYFLLLKLYNKSDYKILSRNFYWLHLPGSDY TSLQDPFRKNKIPLKLTTQTFVSGRSYEMEVLVQNSSKVKQPHLTSSTQKNNFIVADDDDGVDYDLNSGLQLLVPDGHGKKDGLFGTLSRMFGATKGSSS LKVSSEVNGSDVGVAFFLQFSVHAVKSRYEEGEDTRILPVHYSDNYFSLVPGEEMTVKLSFEVPAGVTPRLTLRGWNYPGGHTVHH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09010			glycoside hydrolase family 2 p...		Lus10029917 [exp]	0	1
AT3G12280		RB1, RBL1, RBR1...	RETINOBLASTOMA 1, RETINOBLASTO...		Lus10008667 [exp]	2.6	0.8820
AT4G25450		ABCB28, ATNAP8	ARABIDOPSIS THALIANA NON-INTRI...		Lus10038886 [exp]	3.2	0.8230
AT3G12280		RB1, RBL1, RBR1...	RETINOBLASTOMA 1, RETINOBLASTO...		Lus10026154 [exp]	4.2	0.8560
AT3G20550	FHA	DDL	DAWDLE, SMAD/FHA domain-contai...		Lus10004278 [exp]	4.5	0.8335
AT3G32940			RNA-binding KH domain-containi...		Lus10039188 [exp]	7.7	0.8088
AT2G39990		AteIF3f, EIF2	Arabidopsis thaliana eukaryoti...		Lus10028272 [exp]	7.7	0.8320
AT3G11560			LETM1-like protein (.1.2.3.4)		Lus10038268 [exp]	8.0	0.8448
AT2G31580			tRNAHis guanylyltransferase (....		Lus10041070 [exp]	8.9	0.8138
AT2G23380		SET1, SDG1, ICU...	SETDOMAIN 1, SETDOMAIN GROUP 1...		Lus10009369 [exp]	9.5	0.8558
AT5G16150		PGLCT, GLT1	GLUCOSE TRANSPORTER 1, plastid...		Lus10009158 [exp]	9.8	0.8174

Compare expression of checked genes

Lus10029917 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.