Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27600 1089 / 0 LACS7, ATLACS7 long-chain acyl-CoA synthetase 7 (.1) AT3G05970 1014 / 0 LACS6, ATLACS6 long-chain acyl-CoA synthetase 6 (.1) AT4G23850 464 / 6e-155 LACS4 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) AT1G49430 460 / 2e-153 LRD2, LACS2 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) AT4G11030 449 / 4e-149 AMP-dependent synthetase and ligase family protein (.1) AT1G64400 443 / 6e-147 LACS3 long-chain acyl-CoA synthetase 3, AMP-dependent synthetase and ligase family protein (.1) AT2G47240 438 / 5e-145 CER8, LACS1 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2) AT2G04350 360 / 5e-114 LACS8 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) AT1G77590 351 / 4e-111 LACS9 long chain acyl-CoA synthetase 9 (.1) AT4G14070 187 / 2e-50 AAE15 acyl-activating enzyme 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004483 [exp] 1365 / 0 AT5G27600 1121 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Lus10002454 [exp] 1025 / 0 AT5G27600 1088 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Lus10010530 [exp] 1009 / 0 AT5G27600 1095 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Lus10032380 [exp] 465 / 3e-154 AT4G23850 1053 / 0.0 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) Lus10021021 [exp] 462 / 3e-154 AT1G49430 955 / 0.0 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) Lus10023832 [exp] 454 / 5e-151 AT1G49430 953 / 0.0 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) Lus10032840 [exp] 417 / 7e-137 AT2G47240 961 / 0.0 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2) Lus10001830 [exp] 415 / 2e-136 AT4G11030 910 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10002414 [exp] 393 / 2e-127 AT2G47240 932 / 0.0 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G021300 [exp] 1178 / 0 AT5G27600 1156 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Potri.010G090200 [exp] 1047 / 0 AT3G05970 1078 / 0.0 long-chain acyl-CoA synthetase 6 (.1) Potri.003G139700 [exp] 475 / 2e-159 AT4G23850 1094 / 0.0 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) Potri.001G091900 [exp] 466 / 9e-156 AT4G23850 1101 / 0.0 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) Potri.009G109900 [exp] 462 / 2e-154 AT1G49430 951 / 0.0 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) Potri.002G192400 [exp] 388 / 1e-125 AT2G47240 950 / 0.0 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2) Potri.014G169400 [exp] 343 / 1e-107 AT2G04350 1051 / 0.0 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) Potri.002G084100 [exp] 342 / 2e-107 AT1G77590 1079 / 0.0 long chain acyl-CoA synthetase 9 (.1) Potri.005G177500 [exp] 340 / 5e-107 AT1G77590 1058 / 0.0 long chain acyl-CoA synthetase 9 (.1) Potri.014G169600 [exp] 320 / 1e-100 AT2G04350 866 / 0.0 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF00501 [flax] [poplar] AMP-binding AMP-binding enzyme
Representative CDS sequence Show only first row Show all	>Lus10029918 pacid=23159658 polypeptide=Lus10029918 locus=Lus10029918.g ID=Lus10029918.BGIv1.0 annot-version=v1.0 ATGGAATCCTCAGCTCAACGCCGCCTCGAAGCCGTTCAAGGCCACTTGCTCCTCTCCTCCTCCTCCTCTGCCGACGAGGATCACTCGCTTCTCCTCCAAC CTAACCTCACCGTCTCGTCGCAGTTCGTCAACAGTCAAACTTACAGCGTAAGTCTGCCGGAGAAATTGCAGACCGGGAAGTGGAACGTATACAGATCTGT ACGGTCGCCGATGAAGATTGTTAGCAGGTTGCCTGAGCATCCTGAGATCGAGACATTGCACGATAACTTTGTACATGGTGTTCGGAATTTTCGTGATTGC AAGTACTTGGGGACACGAGTTCGACAGGATGGAAGAGTTGGAGAGTACATGTGGATGACATATGGAGAAGCAGCTATTGCAAGGGAAGCCATAGGTTCTG GCCTCAGGTATCATGGTTTGGATAAGGGAGCTTGTATTGGAATTTACTTTATAAACCGACCAGAATGGCTGGTTGTGGATCATGCTTGTGCAGCATACTC ATACATCTCAGTTCCCTTATATGATACTCTTGGTCCAGATGCAGTTAAGTTTGTAGTGAATCATGCTGATGTCCAAGCCATCTTTTGCAACTCTGAGACC TTGAACACCCTCCTGACATTCGTATCTGAGATCCCATCAGTGAGGCTAATTGTGGTAGTTGGCGGTGTTGATGAGCACTTACCAACCTTGCCTTCGTCTG GAGTCAAGCTCATATCTTATCTGAAATTGATCGGTGAGGGCCGCAGTAATGTACAGCCTTTTATACCTCCTAAATCTGAAGATGTTGCGACGATATGCTA TACCAGTGGTACAACTGGGACGCCAAAGGGAGTTGTCTTGACACATGGAAACTTGATTTCAAGCCTTGCCGGTGCCAGCATGTCTATCAAATTTGATTCT TCAGATAGTTATTTATCTTATCTTCCTTTGGCACACATCTACGAACGAACCAACCAGATATCGTCAGTATACAACGGTTGTGCTGTTGGCTTCTATCAGG GGGACAATTTGAAACTGATGGATGATTTGGCTGTTCTAAAACCAACAATATTCTGCAGTGTCCCTCGGTTGTATAACCGCATATATGATGGGATAACAAC GGCTGTGAAGACTTCTGGAGCATTAAAGGAGAGGTTGTTTAATGCTGCCTTCAACTCAAAGAAGCAAGCAATAATGAGAGGCCGAAATTCATCACCAATG TGGGATAGACTAGTCTTCAACAAAATAAAGGCTAAGCTTGGAGGGCGGGTTCGGTTTATGGGATCAGGTGCTTCACCTTTGTCTCCTGATGTAATGGACT TCCTGAGAGTGTGCTTCGGCTGTCAAGTGCTCGAGGGATATGGAATGACCGAGACGTCTTGTGTTATAAGCATTATGGATGAGGGTGACAATCTATCTGG TCATGTTGGATCTCCTAATCCTGCTTGCGAAGTAAAATTGGTGGATGTTCCTGAAATGAATTACACGTCCGAAGACCAGCCTTATCCTCGTGGCGAAATC TGCGTCAGGGGTCCAACCATTTTTAAGGGCTACTACAAAGACGAAACCCAAACGCGAGAGGTAATAGACGAGGATGGATGGTTACATACTGGAGATATTG GATTATGGTTGGAAGGAGGCCGTCTCAAGATTATCGACAGGAAGAAGAACATATTCAAGCTGGCACAGGGCGAATACATAGCTCCTGAGAAAATCGAGAA TGTCTACACCAAAAGCAGATTCATTGCCCAGTGTTTCATATACGGTGACAGCTTCAACTCGTCCTTAGTTGCTATAGTCTCCGTCGACCCAGATGTGCTG ACCAACTGGGCCGATTCTCAAGGAATCAAGACTGACGATCTAGGCCAGCTGTGCAACGATCCAAGAGCGAAAGCTGCTGTTCTCGCTGACATGGATTCGA TTGGAAAGGAAGCACAGTTGAGAGGTTTCGAATTCGCCAAGGCTGTAACTCTAGTGCCAGAGCCATTCACCCTGGAGAATGGACTACTAACTCCAACATT CAAGATCAAGAGGCCTCAAGCAAAGGACTATTTTGCCAAAGCGATCTCCAACATGTACGCCGAGCTGTCTTCATCCGAACGTCAAACTCCGATCTCAAAG CTGTAG
AA sequence Show only first row Show all	>Lus10029918 pacid=23159658 polypeptide=Lus10029918 locus=Lus10029918.g ID=Lus10029918.BGIv1.0 annot-version=v1.0 MESSAQRRLEAVQGHLLLSSSSSADEDHSLLLQPNLTVSSQFVNSQTYSVSLPEKLQTGKWNVYRSVRSPMKIVSRLPEHPEIETLHDNFVHGVRNFRDC KYLGTRVRQDGRVGEYMWMTYGEAAIAREAIGSGLRYHGLDKGACIGIYFINRPEWLVVDHACAAYSYISVPLYDTLGPDAVKFVVNHADVQAIFCNSET LNTLLTFVSEIPSVRLIVVVGGVDEHLPTLPSSGVKLISYLKLIGEGRSNVQPFIPPKSEDVATICYTSGTTGTPKGVVLTHGNLISSLAGASMSIKFDS SDSYLSYLPLAHIYERTNQISSVYNGCAVGFYQGDNLKLMDDLAVLKPTIFCSVPRLYNRIYDGITTAVKTSGALKERLFNAAFNSKKQAIMRGRNSSPM WDRLVFNKIKAKLGGRVRFMGSGASPLSPDVMDFLRVCFGCQVLEGYGMTETSCVISIMDEGDNLSGHVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEI CVRGPTIFKGYYKDETQTREVIDEDGWLHTGDIGLWLEGGRLKIIDRKKNIFKLAQGEYIAPEKIENVYTKSRFIAQCFIYGDSFNSSLVAIVSVDPDVL TNWADSQGIKTDDLGQLCNDPRAKAAVLADMDSIGKEAQLRGFEFAKAVTLVPEPFTLENGLLTPTFKIKRPQAKDYFAKAISNMYAELSSSERQTPISK L

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27600		LACS7, ATLACS7	long-chain acyl-CoA synthetase...		Lus10029918 [exp]	0	1
AT5G04870		AK1, ATCPK1, CP...	calcium dependent protein kina...		Lus10008958 [exp]	1.7	0.9584
AT1G63380			NAD(P)-binding Rossmann-fold s...		Lus10007038 [exp]	2.0	0.9670
AT5G03700			D-mannose binding lectin prote...		Lus10023868 [exp]	2.0	0.9538
AT1G29280	WRKY	ATWRKY65, WRKY6...	WRKY DNA-binding protein 65 (....		Lus10029252 [exp]	2.4	0.9653
AT2G18250		ATCOAD	4-phosphopantetheine adenylylt...		Lus10026004 [exp]	3.3	0.9467
AT3G50120			Plant protein of unknown funct...		Lus10010064 [exp]	3.5	0.9465
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10029626 [exp]	3.7	0.9449
AT1G65930		cICDH	cytosolic NADP+-dependent isoc...		Lus10007380 [exp]	4.1	0.9437
AT4G36740	HD	HB-5, ATHB40	homeobox protein 40 (.1)		Lus10041719 [exp]	4.2	0.9514
AT1G50510			indigoidine synthase A family ...		Lus10009716 [exp]	5.7	0.9443

Compare expression of checked genes

Lus10029918 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.