Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65450 490 / 8e-172 HXXXD-type acyl-transferase family protein (.1.2.3) AT5G41040 216 / 5e-65 HXXXD-type acyl-transferase family protein (.1.2) AT5G63560 204 / 1e-60 HXXXD-type acyl-transferase family protein (.1) AT3G48720 191 / 1e-55 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1) AT5G48930 184 / 7e-53 HCT hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) AT1G27620 164 / 2e-45 HXXXD-type acyl-transferase family protein (.1) AT1G03390 155 / 6e-42 HXXXD-type acyl-transferase family protein (.1) AT1G28680 152 / 5e-41 HXXXD-type acyl-transferase family protein (.1) AT5G57840 145 / 2e-38 HXXXD-type acyl-transferase family protein (.1) AT2G19070 145 / 2e-38 SHT spermidine hydroxycinnamoyl transferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004481 [exp] 832 / 0 AT1G65450 490 / 3e-169 HXXXD-type acyl-transferase family protein (.1.2.3) Lus10012552 [exp] 226 / 1e-68 AT5G41040 642 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10032554 [exp] 201 / 2e-59 AT5G41040 640 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10043189 [exp] 197 / 5e-58 AT5G41040 635 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10026123 [exp] 184 / 4e-53 AT5G48930 597 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10035190 [exp] 183 / 3e-52 AT5G41040 419 / 5e-144 HXXXD-type acyl-transferase family protein (.1.2) Lus10038184 [exp] 182 / 4e-52 AT1G65450 200 / 2e-59 HXXXD-type acyl-transferase family protein (.1.2.3) Lus10005439 [exp] 181 / 2e-51 AT5G41040 364 / 2e-122 HXXXD-type acyl-transferase family protein (.1.2) Lus10035189 [exp] 177 / 3e-50 AT5G41040 440 / 2e-152 HXXXD-type acyl-transferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G180000 [exp] 511 / 2e-179 AT1G65450 565 / 0.0 HXXXD-type acyl-transferase family protein (.1.2.3) Potri.015G100800 [exp] 214 / 3e-64 AT5G41040 644 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.001G326300 [exp] 209 / 3e-62 AT5G41040 677 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.014G166600 [exp] 195 / 6e-57 AT5G41040 394 / 2e-134 HXXXD-type acyl-transferase family protein (.1.2) Potri.017G068500 [exp] 192 / 2e-56 AT5G41040 583 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.002G244600 [exp] 191 / 1e-55 AT1G65450 205 / 5e-61 HXXXD-type acyl-transferase family protein (.1.2.3) Potri.003G183900 [exp] 188 / 2e-54 AT5G48930 758 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.001G042900 [exp] 182 / 2e-52 AT5G48930 749 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.005G028100 [exp] 178 / 9e-51 AT5G48930 509 / 5e-180 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.018G105500 [exp] 177 / 1e-50 AT5G48930 556 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10029920 pacid=23159862 polypeptide=Lus10029920 locus=Lus10029920.g ID=Lus10029920.BGIv1.0 annot-version=v1.0 ATGGGAGAAGTAGATCATGGCCGGAAGATTGTGGATGACCTCCGCGTCGAGATCAAGGATGTGTGTTACGTACATCCGTCGGAGCAGCCTCCGGCGGAGG GAAGGTCGATGTTCATGTCGAACATCGATCAGGTCTTGAACTTCGACGTCCAGACCGTCAATTTCTTTGCCGCGAACAGAGATTTCCCGCCTCGGTTAGT GACCGAAACGTTGAAGGAGGCGCTGGGGAAAGTGCTGGTTCCGTACAGCTTCCTGGCCGGGAGGTTGAGTACGGACGGGGAGACCGGACGGCTGGAGTTC GATTGCAACGGCAAAGGCGTGGGGTTCGTTGCGGCCGAGAGCGCGTTTAGCGTGGATGAGATTGGGGACTTGAGTTACCCGAACCGGGCGTTTGGGCAGC TGGTTTCCCAGACGGTCCATAACTTGCTAGACCGGACTGCAGCTCCCTGCAATCCCCTTTCCGATGATGATGAATATGATCATCCACTTGCCATTTTTCA GGTGACTAAGTTTAGGTGCGGTGGGTTTGCAATTGGGTTATCTATCAACCATACAGCTTTCGACGGAATGAGCAGGAGGCTGTTCTTGGACAACTTGGCC GCCGTCGCCGGTGGGAAACCACTCCCCGTCCCACCCTGCAACGACCGTCGGCTATTGGCAGCTAGATCACCTCCACGTGTCACCTATCCCCACCCTGAGC TCCGTCAACTTGATAATAATAATCTTGTTTCAGCGACCACTCAAGTGTTCGAAACAACGGACGAAGATCTGGATTTCAAGATCTTCCCGTTGACATCCTC ACACGTTTCCCTCCTCAAACACAAAGCGAGAAATCCGCATGCCACGTCACCATCGCCGGTGTCCGGATTCTACGCAGTCGCTGCTCTTATATGGCGGTGC AAGGCTTTGTCCTACTCTCCTTCAGCCGGAGGTGGCGAAGAAGACAGAGTTTCCACGATCCTATACGCGGTTAACATCAGGCACAAACTGCTGACCCCAT CACTGGCCGCATCCTACACAGGCAACGCGGTACTCACGGCCTACGCAACCGCCAAATGCAGCGAGATATCGGAGGCGCCGCTGTGGAGGATGGCGGAGAT GTTGGCGGAAGGTGGAAAGAGAATAACATCAGAGTACGTGAGGTCGGTGATAGACTGGGGGGAGGTGTACGGAAGAGGGTTCCCATGTGGGGAGATATTG GTTTCTTCGTGGTGGAGGTTAGGGTTTGCGGAGGTTGATTACCCTTGGGGCAAACCTATCTACAGCTGTCCGGTCGTCCACCATAGGAAGGATATCGTGC TGGTGTTCCCGGATATTGTTGACGAAGATGGTGTTAATGTCATTATTGCCCTCCCTCTGCCTCAGATGCGCAAGTTTGGTTCGCTTTTTGATGCGATTTT ATCGTCTTTAGATAATTCTTGA
AA sequence Show only first row Show all	>Lus10029920 pacid=23159862 polypeptide=Lus10029920 locus=Lus10029920.g ID=Lus10029920.BGIv1.0 annot-version=v1.0 MGEVDHGRKIVDDLRVEIKDVCYVHPSEQPPAEGRSMFMSNIDQVLNFDVQTVNFFAANRDFPPRLVTETLKEALGKVLVPYSFLAGRLSTDGETGRLEF DCNGKGVGFVAAESAFSVDEIGDLSYPNRAFGQLVSQTVHNLLDRTAAPCNPLSDDDEYDHPLAIFQVTKFRCGGFAIGLSINHTAFDGMSRRLFLDNLA AVAGGKPLPVPPCNDRRLLAARSPPRVTYPHPELRQLDNNNLVSATTQVFETTDEDLDFKIFPLTSSHVSLLKHKARNPHATSPSPVSGFYAVAALIWRC KALSYSPSAGGGEEDRVSTILYAVNIRHKLLTPSLAASYTGNAVLTAYATAKCSEISEAPLWRMAEMLAEGGKRITSEYVRSVIDWGEVYGRGFPCGEIL VSSWWRLGFAEVDYPWGKPIYSCPVVHHRKDIVLVFPDIVDEDGVNVIIALPLPQMRKFGSLFDAILSSLDNS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65450			HXXXD-type acyl-transferase fa...		Lus10029920 [exp]	0	1
AT5G11730			Core-2/I-branching beta-1,6-N-...		Lus10034348 [exp]	1.0	1.0000
AT5G37060		ATCHX24	cation/H+ exchanger 24, ARABID...		Lus10031852 [exp]	1.4	0.9902
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10011999 [exp]	1.7	0.9854
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10007909 [exp]	2.0	0.9826
					Lus10011637 [exp]	2.2	0.9807
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10029377 [exp]	2.4	0.9779
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10008682 [exp]	2.6	0.9739
AT1G52190			Major facilitator superfamily ...		Lus10008539 [exp]	2.8	0.9691
AT4G00350			MATE efflux family protein (.1...		Lus10036374 [exp]	3.3	0.9581
AT1G60630			Leucine-rich repeat protein ki...		Lus10019429 [exp]	3.5	0.9494

Compare expression of checked genes

Lus10029920 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.