Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72920 106 / 3e-26 Toll-Interleukin-Resistance (TIR) domain family protein (.1) AT1G72940 106 / 1e-25 Toll-Interleukin-Resistance (TIR) domain-containing protein (.1) AT5G36930 108 / 2e-25 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G72910 100 / 1e-23 Toll-Interleukin-Resistance (TIR) domain-containing protein (.1) AT3G44630 101 / 3e-23 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3) AT3G44480 100 / 1e-22 COG1, RPP10, RPP1 recognition of peronospora parasitica 1, Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G17680 100 / 2e-22 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G40910 99 / 2e-22 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G18360 99 / 2e-22 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G31540 99 / 2e-22 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029919 [exp] 166 / 1e-49 AT5G36930 105 / 5e-26 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10004482 [exp] 163 / 1e-47 AT1G56540 111 / 2e-27 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10026845 [exp] 152 / 2e-43 AT5G36930 145 / 8e-39 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10041606 [exp] 145 / 2e-40 AT5G36930 140 / 5e-37 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10027920 [exp] 144 / 6e-40 AT5G36930 139 / 3e-36 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10030498 [exp] 135 / 8e-38 AT5G36930 115 / 2e-29 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10009500 [exp] 125 / 3e-34 AT1G72940 115 / 4e-30 Toll-Interleukin-Resistance (TIR) domain-containing protein (.1) Lus10012063 [exp] 125 / 1e-33 AT5G36930 124 / 5e-34 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10012852 [exp] 124 / 6e-33 AT5G17680 100 / 1e-23 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G004500 [exp] 112 / 6e-29 AT5G36930 152 / 3e-42 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002200 [exp] 117 / 2e-28 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G019710 [exp] 116 / 2e-28 AT5G36930 445 / 2e-144 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.013G098100 [exp] 108 / 4e-28 AT5G36930 159 / 1e-45 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G017082 [exp] 114 / 2e-27 AT5G36930 638 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.017G105201 [exp] 114 / 2e-27 AT4G12010 549 / 4e-174 Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.013G097050 [exp] 106 / 2e-27 AT5G36930 158 / 3e-45 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002568 [exp] 112 / 3e-27 AT5G36930 439 / 2e-142 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.005G062700 [exp] 107 / 3e-27 AT4G16990 149 / 1e-41 RESISTANCE TO LEPTOSPHAERIA MACULANS 3, disease resistance protein (TIR-NBS class), putative Potri.017G104301 [exp] 113 / 5e-27 AT5G17680 566 / 1e-178 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain
Representative CDS sequence Show only first row Show all	>Lus10029921 pacid=23159782 polypeptide=Lus10029921 locus=Lus10029921.g ID=Lus10029921.BGIv1.0 annot-version=v1.0 ATGAAGCCAACAACCTCAATATTCCACGACGTGTTCGTCAGCTTCCGAGGTCCCGACGTACGGAACGGGTTCAAGGACCATCTGTTCGCCGCCCTCCGGC GACAAGGTGTCACGGTGTTCAGCGACGACGAGGCGGACCGCGGCCACAACGTGGACGAGGCCGTCCGCAGAGCCATCGACGTGTCGAGCTTCTACGTCGT CGTATTGAGCAGGACCTACGCTTCGTCCCGCCACTGCTTGGACGAGCTGGTCAGGATCATGACCCACGCCGGCGCCGGCGCCGGCGACATGTGTAGTAAT TGTTGCCCGGTTTTCTACGACGTCTCCCCTAATGATCTATCTAGATGTTTCGGTAAGGATTTGGATCGGCACAAGAGGGAATTCAGCTACGAAACCGTTG ATCAGTGGATCCGGGCGTTGACCTGGATAGCTGGTATCGCCGGCTGGGTCTTCACGTCAACCTCGCAGTCTGAAGCGGTGCTGGTGGAGGAAATTGCCTC AACAATGCGGCATAAGGTGCAACAGCTCACTCAACCGCCGCCCCCCGCCGCCAGTCCACCGTGGATATGGGAACATCCTTCCGACGAACCAAAGTACGAT CCGGTCTCTCTCGTAGCTCAGCTGTTCGCCGGCGCCCAGTCAGGAAAAAACCGTCCGAACATAACTGCCGTCAACTCCAAAGTCAAAGTCAAAGCCGCTG GGGATACCAAAAACAACACGATCAGCACTACTTGCGGGATCTACGTGTTCGAGTTTCCAGACAGAGAAGCAAGTGACATGGCACTCGAGTCCTCCCCGTG GTACATCGCCGGCAGCCTCATCTTCCTCGGGAAGTTACTATCCGACCCCCAGCCGCCATTTTGCGCCGCCAACAACTCGATGGCTAATAAGCTGTTGTCG GAGGAGGAGAGGAATACTGTTCCGGTGTGGGTGAGGCTGTATGGTGTTCCTGAGGAGCACATGAACGCTAGAGCGCTGAGCTGTATAGCCAGCGCTGTTG GGACGAAGCCTCTCTATAAGGATGATGGAGAAACAGCTGGTTTATTTATGATGAGGTTCAAGTGCAAATCCAGCCGTCCGTTTTTTGCGGCTAGGATGTG CGTGGAGATGAGGGACCAGTAG
AA sequence Show only first row Show all	>Lus10029921 pacid=23159782 polypeptide=Lus10029921 locus=Lus10029921.g ID=Lus10029921.BGIv1.0 annot-version=v1.0 MKPTTSIFHDVFVSFRGPDVRNGFKDHLFAALRRQGVTVFSDDEADRGHNVDEAVRRAIDVSSFYVVVLSRTYASSRHCLDELVRIMTHAGAGAGDMCSN CCPVFYDVSPNDLSRCFGKDLDRHKREFSYETVDQWIRALTWIAGIAGWVFTSTSQSEAVLVEEIASTMRHKVQQLTQPPPPAASPPWIWEHPSDEPKYD PVSLVAQLFAGAQSGKNRPNITAVNSKVKVKAAGDTKNNTISTTCGIYVFEFPDREASDMALESSPWYIAGSLIFLGKLLSDPQPPFCAANNSMANKLLS EEERNTVPVWVRLYGVPEEHMNARALSCIASAVGTKPLYKDDGETAGLFMMRFKCKSSRPFFAARMCVEMRDQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36930			Disease resistance protein (TI...		Lus10029921 [exp]	0	1
AT2G43590			Chitinase family protein (.1)		Lus10003587 [exp]	1.4	0.9869
AT3G52710			unknown protein		Lus10017030 [exp]	2.4	0.9701
AT4G18210		ATPUP10	purine permease 10 (.1)		Lus10040118 [exp]	3.6	0.9653
AT4G01250	WRKY	ATWRKY22, WRKY2...	WRKY family transcription fact...		Lus10032303 [exp]	5.2	0.9685
AT1G77120		ADH1, ATADH, AT...	ARABIDOPSIS THALIANA ALCOHOL D...		Lus10034042 [exp]	5.3	0.9725
AT3G46510		ATPUB13	ARABIDOPSIS THALIANA PLANT U-B...		Lus10007511 [exp]	5.7	0.9793
AT3G07310			Protein of unknown function (D...		Lus10002342 [exp]	7.1	0.9726
AT2G03340	WRKY	WRKY3	WRKY DNA-binding protein 3 (.1...		Lus10000173 [exp]	8.4	0.9699
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10014673 [exp]	9.5	0.9714
AT1G60500		DRP4C	Dynamin related protein 4C (.1...		Lus10025903 [exp]	10.1	0.9586

Compare expression of checked genes

Lus10029921 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.