Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39660 801 / 0 AGT2 alanine:glyoxylate aminotransferase 2 (.1) AT3G08860 627 / 0 PYD4 PYRIMIDINE 4 (.1) AT2G38400 610 / 0 AGT3 alanine:glyoxylate aminotransferase 3 (.1.2) AT1G80600 175 / 2e-49 WIN1 HOPW1-1-interacting 1 (.1) AT5G46180 152 / 6e-41 DELTA-OAT ornithine-delta-aminotransferase (.1) AT3G22200 139 / 8e-36 HER1, GABA-T, POP2 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) AT3G48730 90 / 4e-19 GSA2 glutamate-1-semialdehyde 2,1-aminomutase 2 (.1) AT5G63570 83 / 9e-17 GSA1 "glutamate-1-semialdehyde-2,1-aminomutase", glutamate-1-semialdehyde-2,1-aminomutase (.1) AT5G57590 44 / 0.0003 BIO1 biotin auxotroph 1, adenosylmethionine-8-amino-7-oxononanoate transaminases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004480 [exp] 923 / 0 AT4G39660 801 / 0.0 alanine:glyoxylate aminotransferase 2 (.1) Lus10025262 [exp] 614 / 0 AT3G08860 722 / 0.0 PYRIMIDINE 4 (.1) Lus10009086 [exp] 523 / 0 AT3G08860 625 / 0.0 PYRIMIDINE 4 (.1) Lus10008025 [exp] 180 / 2e-50 AT1G80600 614 / 0.0 HOPW1-1-interacting 1 (.1) Lus10031196 [exp] 173 / 8e-49 AT1G80600 606 / 0.0 HOPW1-1-interacting 1 (.1) Lus10023299 [exp] 167 / 3e-46 AT5G46180 743 / 0.0 ornithine-delta-aminotransferase (.1) Lus10038510 [exp] 167 / 4e-46 AT5G46180 741 / 0.0 ornithine-delta-aminotransferase (.1) Lus10010465 [exp] 144 / 1e-37 AT3G22200 756 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Lus10003810 [exp] 144 / 1e-37 AT3G22200 758 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G085600 [exp] 818 / 0 AT4G39660 814 / 0.0 alanine:glyoxylate aminotransferase 2 (.1) Potri.006G106800 [exp] 655 / 0 AT3G08860 771 / 0.0 PYRIMIDINE 4 (.1) Potri.016G132200 [exp] 652 / 0 AT2G38400 769 / 0.0 alanine:glyoxylate aminotransferase 3 (.1.2) Potri.005G082100 [exp] 329 / 6e-112 AT4G39660 219 / 1e-69 alanine:glyoxylate aminotransferase 2 (.1) Potri.007G080000 [exp] 279 / 5e-93 AT4G39660 278 / 5e-93 alanine:glyoxylate aminotransferase 2 (.1) Potri.017G053500 [exp] 179 / 7e-51 AT1G80600 677 / 0.0 HOPW1-1-interacting 1 (.1) Potri.005G095800 [exp] 177 / 5e-50 AT1G80600 636 / 0.0 HOPW1-1-interacting 1 (.1) Potri.011G082800 [exp] 159 / 2e-43 AT5G46180 734 / 0.0 ornithine-delta-aminotransferase (.1) Potri.016G018500 [exp] 145 / 4e-38 AT3G22200 826 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Potri.006G020900 [exp] 142 / 6e-37 AT3G22200 834 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00202 [flax] [poplar] Aminotran_3 Aminotransferase class-III
Representative CDS sequence Show only first row Show all	>Lus10029922 pacid=23159724 polypeptide=Lus10029922 locus=Lus10029922.g ID=Lus10029922.BGIv1.0 annot-version=v1.0 ATGACGTTCCACCGCCAACTCCTCAGGACAACCTTGCAGAACGCCAATCGGAACCACTTCCCAAAACTCGCTCACGGCTGCCGCTTCTTTTCCGATGCCC CGCCGCAGCTCCCACCGTGCGATCATCAGCCAAAGCCCTACAACGGGCCATCCGCCGACGAAGTCTTTCAGAAGCGCAAGAAGTTTCTCGGTTCTTCACT CTTCTACTACTATCAGAAACCTCTGAATATAGTGGAAGGAAAGATGCAATATCTATATGATGAGAATGGGAGGCGGTATCTGGACGCCATTGCTGGGATC GTCACTGTTTCTGCTGGCCACTGCCATCCTGAAATTTTGAAAGCGATCCATCAACAAAGTGAGCTTCTTCAGCATGCAACCACCATTTACTTGCATCACG CGATTGCTGATTTTGCTGAAGGGTTGGCGGCGAAGATGCCTGGAAACCTTAAGGTTGTGTATTTTGTAAATTCTGGGACTGAGGCAAATGAATTGGCGAT GCTGATGGCTAGGCTGTATACTGGTAATCTTGAGATGATCTCTCTGAGAAATGCTTATCATGGTGGGAGCTCTAGTACTATTGGGCTCACGGCTTTGAAT ACTTGGAAATACTCGATTCCGCAGGGTGAAATTCACCATGTGATAAATCCAGATCCGTACAGAGGGATCTTTGGCGCTGATGCGGCTGGTTATGCCAAAG ATGTGGAAGACCACATTGCTTTCGGTACATCCGGAAAAGTTGCTGGATTTATTGCCGAGACAATTCAGGGAGTTGGAGGAGCAGTTGAGTTGGCCCCTGG CTATTTGAAATTGGTATATGAAACCGTTCGAAAAGCCGGCGGGGTATGCATCGCTGATGAAGTGCAAACTGGATTTGGACGAACGGGAAGTCACTATTGG GGATTCGAAACACAAGGTGTCATCCCTGACATTGTTACGATGGCTAAGGGGATTGGCAACGGTCTACCATTAGGAGCAGTGGTGACAACACCAGAAATAG CTAGCGTGTTGGCTCAGAAAGTCCAGTTCAACACTTTTGGTGGGAACCCGGTCTGTTCTGCCGGTGGACTTGCAGTTTTGAGAGTTCTTGACAAAGAAAA GCGTCAACAACATTGTGCTGACATTGGAACCCACCTGCTTAAACGTCTGGGAGATCTGAAAGAAAAACATGACATCATTGGGGATGTTAGAGGCAGAGGA TTGATGTTGGGTGTAGAGCTAGTGACCGACAGAAAAGAGAAGACGCCTGCCAAAGCCGAAACGTTAGTCTTGTTCGAAAAGCTCCGAGAGCTGGGTATTC TAGTTGGGAAAGGAGGACTCAATGGAAATGTGTTTCGAATAAAACCACCAATGTGCTTCTCCAAAGATGATGCTGACTTTCTTGTGGATGCTTTGGACTA TTCTATGTCAAAGCTTTGA
AA sequence Show only first row Show all	>Lus10029922 pacid=23159724 polypeptide=Lus10029922 locus=Lus10029922.g ID=Lus10029922.BGIv1.0 annot-version=v1.0 MTFHRQLLRTTLQNANRNHFPKLAHGCRFFSDAPPQLPPCDHQPKPYNGPSADEVFQKRKKFLGSSLFYYYQKPLNIVEGKMQYLYDENGRRYLDAIAGI VTVSAGHCHPEILKAIHQQSELLQHATTIYLHHAIADFAEGLAAKMPGNLKVVYFVNSGTEANELAMLMARLYTGNLEMISLRNAYHGGSSSTIGLTALN TWKYSIPQGEIHHVINPDPYRGIFGADAAGYAKDVEDHIAFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYETVRKAGGVCIADEVQTGFGRTGSHYW GFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIASVLAQKVQFNTFGGNPVCSAGGLAVLRVLDKEKRQQHCADIGTHLLKRLGDLKEKHDIIGDVRGRG LMLGVELVTDRKEKTPAKAETLVLFEKLRELGILVGKGGLNGNVFRIKPPMCFSKDDADFLVDALDYSMSKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39660		AGT2	alanine:glyoxylate aminotransf...		Lus10029922 [exp]	0	1
AT1G11360			Adenine nucleotide alpha hydro...		Lus10018515 [exp]	1.4	0.8531
AT1G54120			unknown protein		Lus10013152 [exp]	4.2	0.8564
AT1G63220			Calcium-dependent lipid-bindin...		Lus10002235 [exp]	4.9	0.8385
AT4G38690			PLC-like phosphodiesterases su...		Lus10034483 [exp]	6.0	0.8228
AT3G49760	bZIP	ATBZIP5	basic leucine-zipper 5 (.1)		Lus10011557 [exp]	6.2	0.8180
AT3G59920		ATGDI2	RAB GDP dissociation inhibitor...		Lus10027094 [exp]	7.0	0.8333
AT2G42590		GENERALREGULATO...	general regulatory factor 9 (....		Lus10020705 [exp]	8.1	0.8231
AT5G14890			NHL domain-containing protein ...		Lus10033413 [exp]	8.5	0.8271
AT5G63910		FCLY	farnesylcysteine lyase (.1)		Lus10010948 [exp]	10.0	0.8405
AT1G04690		KV-BETA1, KAB1	potassium channel beta subunit...		Lus10011751 [exp]	10.2	0.8052

Compare expression of checked genes

Lus10029922 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.