Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05350 976 / 0 Metallopeptidase M24 family protein (.1) AT4G36760 558 / 0 ATAPP1 ARABIDOPSIS THALIANA AMINOPEPTIDASE P1, aminopeptidase P1 (.1) AT1G09300 54 / 2e-07 Metallopeptidase M24 family protein (.1.2) AT4G29490 43 / 0.0008 Metallopeptidase M24 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004479 [exp] 1156 / 0 AT3G05350 910 / 0.0 Metallopeptidase M24 family protein (.1) Lus10041716 [exp] 547 / 0 AT4G36760 987 / 0.0 ARABIDOPSIS THALIANA AMINOPEPTIDASE P1, aminopeptidase P1 (.1) Lus10024034 [exp] 493 / 8e-167 AT4G36760 924 / 0.0 ARABIDOPSIS THALIANA AMINOPEPTIDASE P1, aminopeptidase P1 (.1) Lus10010905 [exp] 61 / 4e-09 AT1G09300 642 / 0.0 Metallopeptidase M24 family protein (.1.2) Lus10031427 [exp] 59 / 7e-09 AT1G09300 637 / 0.0 Metallopeptidase M24 family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G021400 [exp] 1055 / 0 AT3G05350 1025 / 0.0 Metallopeptidase M24 family protein (.1) Potri.007G029700 [exp] 548 / 0 AT4G36760 1015 / 0.0 ARABIDOPSIS THALIANA AMINOPEPTIDASE P1, aminopeptidase P1 (.1) Potri.007G030050 [exp] 247 / 5e-77 AT4G36760 397 / 4e-136 ARABIDOPSIS THALIANA AMINOPEPTIDASE P1, aminopeptidase P1 (.1) Potri.018G145576 [exp] 99 / 7e-25 AT4G36760 166 / 1e-49 ARABIDOPSIS THALIANA AMINOPEPTIDASE P1, aminopeptidase P1 (.1) Potri.T045100 [exp] 99 / 7e-25 AT4G36760 166 / 1e-49 ARABIDOPSIS THALIANA AMINOPEPTIDASE P1, aminopeptidase P1 (.1) Potri.018G145584 [exp] 69 / 9e-15 AT4G36760 85 / 2e-21 ARABIDOPSIS THALIANA AMINOPEPTIDASE P1, aminopeptidase P1 (.1) Potri.013G007100 [exp] 44 / 0.0005 AT1G09300 643 / 0.0 Metallopeptidase M24 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0356 [flax] [poplar] AMP_N-like PF01321 [flax] [poplar] Creatinase_N Creatinase/Prolidase N-terminal domain CL0356 [flax] [poplar] PF00557 [flax] [poplar] Peptidase_M24 Metallopeptidase family M24
Representative CDS sequence Show only first row Show all	>Lus10029923 pacid=23159634 polypeptide=Lus10029923 locus=Lus10029923.g ID=Lus10029923.BGIv1.0 annot-version=v1.0 ATGCGTTCACTACCATCGCCAATCATGCGGCCGCTCTATCTCTCATCTTCATCTTCTCGTTCGCTCTGCTTCTTCTCTCGCACCCTTTTCCCCAAATCAA TTCTCCCCAACTTCGTAGCCAATCCCAGAACCACCTCTACCTCATCAAGATTCAATCTTCTGATCCGTAATTGCAGCTCAATCTCCGCCAAGCCCTCTTC CGAGCTCCGGAGACAAAAGGGCGGTAGTTCCGATAGCTCATCCGACGAGAAGCTCAGAGCTCTTCGTGGGTTGTTCGCCAAGCCCGAGATTGGCATCGAC GCTTATGTTATACCTTCTCAGGATGCTCACCAGAGTGAATTCATTGCTGAGTGTTACATGCGGAGAGGGTTCATCTCTGGCTTCACTGGGAGCGCTGGAA CTGCTGTGGTTACTAAAGACCAGGCTGCTCTTTGGACTGATGGGCGATACTTTCTCCAGGCTGAGAAGCAGTTGAGTTCTAGCTGGACGCTTATGCGTGC GGGTAACAATGGAGTTCCAACAGCGAGTGAATGGTTGAATCATGTGTTAGCTCCTGGTGCTAAAGTTGGGATTGATCCTTTCCTTTTCTCCTTTGATGCT GCTGAGGAATTGAAAGGGAATATAGCCAAGAGGGATCACAAGTTGGTATACTTGTATGATGTGAACATAGTGGATGAGATATGGAAAGATTCGAGACCGG AGCCTCCGATCGAACCGATTAGGGTGCATGAGCTGAAATATGCTGGTGTGGAAGTGGGCTCTAAGCTATCTTGGCTCAGGACTGAACTTGTCAATGCTGG TTCGTCCGCAATTGTTATTTCCATGCTTGATGAAATTGCCTGGCTTTTGAACTTGCGAGGCGGTGATGTTCCTCATTCACCTGTTATGTATGCATATCTA GTCGTCACGATGGACGATGCGAAATTGTTTGTGGATAGTTCTAAAGTGACTCCCGAAGTCTGGAGTCATTTGAAGAATGCAGGTGTTCAGTTGAGGCCAT ACGAGTCCATTCTTTCTGAAATCGAAAGTTTGGCTTTGCAAGGTACAGAACTGTGGTTGGATCCATCTTCTGTCAATGCTGCGATAGTAAATTCATATAG GACTGCTTGTGACAAAACGAGTGGAGCTCGAGCTGGTCAATCTTTGGGACCTTCTGGAGTTTATAGGACATCTCCAATCTCTTTAGCAAAAGCACTGAAG AATCCTTGCGAGTTAGAAGGCATGCGCAATGCTCATCTTAGAGATGCAGCTGCTTTGGTACAGTTTTGGACCTGGCTCGAAGACGAAATTCGCAAGGGCA CAAAGCTAACAGAAGTAGACGTAGCTGATAAACTTCTCGTGTTACGGAAACAGCAAGATGGATTCATCGACACTAGCTTTGATACAATAAGTGGCTCTGG CGCAAATGGTGCTATCATACACTACACAGCTGAGCCAGGGAGCTGTAGCATTGTGGATTCAGAGAACCTCTTTTTGTTGGACAGTGGAGCTCAATACGTG GACGGAACAACTGATATTACGAGGACAGTGCACTTCGGTGAACCAACATCCCACGAAAAGGAATGCTTCACCCGGGTTTTACAGGGCCATATAGCTCTGG ATCAAGCAGTATTCCCTGGAAATACTGCCGGCTTTGTGTTGGATGCATTTGCCCGCTCCTCTCTGTGGAAAATAGGCCTTGACTACCGCCACGGGACTGG ACATGGCGTCGGAGCTGCTCTGAACGTTCACGAAGGCCCTCAAAGCATAAGCTTTCGGTTTGGGAACACGACTCCGCTGCAGAAGGGCATGATAGTGAGT AACGAGCCGGGATACTATGAAGATCATGCCTTTGGCATCCGAATCGAGAATCTTCTTCATGTCAAAGAGGCAAATACTCCATACCGGTTCGGAGGAATCG GCTACCTGGATTTTGAAAAGCTCACGTTCGTCCCCATCCAGAACAAAATGGTGGATATATCCTTGCTTTCTGATGCTGAGATTGATTGGCTCAACGATTA CCATTCACAAGTCTGGGAGAAGGTGTCTCCTCTGGTTGAAGGTGCAGCTAAGCAATGGCTTTGGGACAACACTCGACTACTTGTTCGGCAGTGA
AA sequence Show only first row Show all	>Lus10029923 pacid=23159634 polypeptide=Lus10029923 locus=Lus10029923.g ID=Lus10029923.BGIv1.0 annot-version=v1.0 MRSLPSPIMRPLYLSSSSSRSLCFFSRTLFPKSILPNFVANPRTTSTSSRFNLLIRNCSSISAKPSSELRRQKGGSSDSSSDEKLRALRGLFAKPEIGID AYVIPSQDAHQSEFIAECYMRRGFISGFTGSAGTAVVTKDQAALWTDGRYFLQAEKQLSSSWTLMRAGNNGVPTASEWLNHVLAPGAKVGIDPFLFSFDA AEELKGNIAKRDHKLVYLYDVNIVDEIWKDSRPEPPIEPIRVHELKYAGVEVGSKLSWLRTELVNAGSSAIVISMLDEIAWLLNLRGGDVPHSPVMYAYL VVTMDDAKLFVDSSKVTPEVWSHLKNAGVQLRPYESILSEIESLALQGTELWLDPSSVNAAIVNSYRTACDKTSGARAGQSLGPSGVYRTSPISLAKALK NPCELEGMRNAHLRDAAALVQFWTWLEDEIRKGTKLTEVDVADKLLVLRKQQDGFIDTSFDTISGSGANGAIIHYTAEPGSCSIVDSENLFLLDSGAQYV DGTTDITRTVHFGEPTSHEKECFTRVLQGHIALDQAVFPGNTAGFVLDAFARSSLWKIGLDYRHGTGHGVGAALNVHEGPQSISFRFGNTTPLQKGMIVS NEPGYYEDHAFGIRIENLLHVKEANTPYRFGGIGYLDFEKLTFVPIQNKMVDISLLSDAEIDWLNDYHSQVWEKVSPLVEGAAKQWLWDNTRLLVRQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05350			Metallopeptidase M24 family pr...		Lus10029923 [exp]	0	1
AT1G59840		CCB4	cofactor assembly of complex C...		Lus10036677 [exp]	2.0	0.8941
AT2G26280		CID7	CTC-interacting domain 7 (.1)		Lus10038081 [exp]	3.2	0.8900
AT5G58870		FTSH9	FTSH protease 9 (.1)		Lus10040695 [exp]	9.2	0.8429
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Lus10034055 [exp]	9.3	0.8544
AT1G55320		AAE18	acyl-activating enzyme 18 (.1....		Lus10012931 [exp]	12.4	0.8454
AT2G24640		UBP19	ubiquitin-specific protease 19...		Lus10026918 [exp]	14.4	0.8525
AT5G01260			Carbohydrate-binding-like fold...		Lus10004826 [exp]	17.1	0.8453
AT5G01510		RUS5	ROOT UV-B SENSITIVE 5, Protein...		Lus10027788 [exp]	17.2	0.8365
AT3G10350			P-loop containing nucleoside t...		Lus10037982 [exp]	17.5	0.8123
AT3G14150			Aldolase-type TIM barrel famil...		Lus10013174 [exp]	17.7	0.8311

Compare expression of checked genes

Lus10029923 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.