Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54990 399 / 1e-135 RGR1, AXR4 REDUCED ROOT GRAVITROPISM 1, REDUCED ROOT GRAVITROPISM, AUXIN RESISTANT 4, alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004478 [exp] 711 / 0 AT1G54990 461 / 4e-160 REDUCED ROOT GRAVITROPISM 1, REDUCED ROOT GRAVITROPISM, AUXIN RESISTANT 4, alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G021500 [exp] 499 / 2e-174 AT1G54990 467 / 6e-162 REDUCED ROOT GRAVITROPISM 1, REDUCED ROOT GRAVITROPISM, AUXIN RESISTANT 4, alpha/beta-Hydrolases superfamily protein (.1) Potri.001G201500 [exp] 42 / 0.0006 AT1G52510 584 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029924 pacid=23159831 polypeptide=Lus10029924 locus=Lus10029924.g ID=Lus10029924.BGIv1.0 annot-version=v1.0 ATGGCGATAATTACAGAGGAACCAGAACCGGAGCCATCACCGCCGGTGGTGAAAGTCCCATCGCCGAACCTAAACAAGCCTAGCAGCAACAGCCCATTTG TCTTCTGGTTCTACTTCACACTAGGAGTATCGATAATCACTCTATCAACAGTATTCCTCTCTTCCTTTTCCCAATCTTCTGACCCCAAATCGTTCTTCCT CTCACTGCCATCCCCCCTCCGTAGCCACTACTCCAACGGCCGGATCGTGAAGGTCCAGCTGGCTCAGAGTCAGAAACCGGTCGAGGTCTTCGTCTTCCAA GGTAATAAGATCCATGGCGGAAGCGAGAATGTCCTGATTGTTCATGGATTAAGTTTGAGTTCTTTCTCCTTCAGAAAAGTTGTGAACTTTTTAGCTTCTA GAGGGATTCATGGGGCTGCGATTGACTTTCCCGGGAATGGCTTCTCTGACAAATCAAGGGAAGTAATGGAAGAAAGAGGGAATGGTTTCTTTGAGAGGCT GTTCGATGTGTATGGCTTGATTAAGGAGAAAGGTTTGTTCTGGGCGTTTGATAACATGGTTGAAACTGGTGAGCTTCCTTATGAGGCTGTTCAGTCTCAT TTCAGTAAGGAAAAGAGTGTGCTTAGGCCAATTGTGTTGGATAGTGAAGAGATTGGGAAACTTATGGGGCAAGTGATTGAAACCATAGGGGTAGCTCCTG TGCATTTGGTTCTCCACGATTCGAGCTTGAACATGGTTGCGAATTGGGTTTCAGAAAATCCTAACTTTGTTAGGAGTGTGACACTTGTTGATACCGGCTC AAGATCAGCTATCCCTTTGTGGGTTCTTCAGCTTCCGTTGCTTAGAGAGGTCGTTTTATGGTCGAGCTTTGTGTACGGTAGGCTGATCAACGCGTGTTGT TCGAAGGGGATCAGTGGTGCGGATTTGGAATCGTACAGGATGGTGTTGAGAGATGGGAGAAGTGCTGTTGTGGGAACAGAGATGATGATGAATGCTAGCT TTGATGTAGCGGAATGGGGAGGGTTGGATGGTGTGAAAGGGATGCCAATGCAAGTGATTTGGTCGAGGAGTTGGTCGAAAGAGTGGAGTGATGAAGGGCG TAGAGTGTCTGAGGCACTTCCTGGGGCGAAATTCGTTGAACATTCCGGAGGGCGGTGGCCTCAGGATGACACGGCCGAGGAGATAGGTGAGCATGTCGCG ACATTTGTATCATCTCTACCGAAATCAGTTCGAGAAGTTGAAGAGGAACGCGTACCAGAACACATCCAGAAGATGCTTGATGAGGCTAAACAGAATCCCA ACCACCACCACCATGGCCATTCCGGCCTCGATCATGGACACGGCTCCGAAGGGTACATGGACGCTTACGGGCTTGGCCAAGCATGGGGCAGCTAG
AA sequence Show only first row Show all	>Lus10029924 pacid=23159831 polypeptide=Lus10029924 locus=Lus10029924.g ID=Lus10029924.BGIv1.0 annot-version=v1.0 MAIITEEPEPEPSPPVVKVPSPNLNKPSSNSPFVFWFYFTLGVSIITLSTVFLSSFSQSSDPKSFFLSLPSPLRSHYSNGRIVKVQLAQSQKPVEVFVFQ GNKIHGGSENVLIVHGLSLSSFSFRKVVNFLASRGIHGAAIDFPGNGFSDKSREVMEERGNGFFERLFDVYGLIKEKGLFWAFDNMVETGELPYEAVQSH FSKEKSVLRPIVLDSEEIGKLMGQVIETIGVAPVHLVLHDSSLNMVANWVSENPNFVRSVTLVDTGSRSAIPLWVLQLPLLREVVLWSSFVYGRLINACC SKGISGADLESYRMVLRDGRSAVVGTEMMMNASFDVAEWGGLDGVKGMPMQVIWSRSWSKEWSDEGRRVSEALPGAKFVEHSGGRWPQDDTAEEIGEHVA TFVSSLPKSVREVEEERVPEHIQKMLDEAKQNPNHHHHGHSGLDHGHGSEGYMDAYGLGQAWGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54990		RGR1, AXR4	REDUCED ROOT GRAVITROPISM 1, R...		Lus10029924 [exp]	0	1
AT4G29870			Oligosaccharyltransferase comp...		Lus10035623 [exp]	2.4	0.9324
AT1G11680		EMB1738, CYP51A...	embryo defective 1738, CYTOCHR...		Lus10001713 [exp]	3.0	0.9233
AT2G39020			Acyl-CoA N-acyltransferases (N...		Lus10040418 [exp]	3.2	0.9305
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10037071 [exp]	5.5	0.8896
AT5G07900			Mitochondrial transcription te...		Lus10040820 [exp]	8.4	0.8719
AT1G51160			SNARE-like superfamily protein...		Lus10027541 [exp]	8.5	0.9001
AT4G36020		CSDP1	cold shock domain protein 1 (....		Lus10041902 [exp]	9.9	0.8906
AT5G23140		NCLPP7, NCLPP2,...	nuclear-encoded CLP protease P...		Lus10017397 [exp]	10.4	0.8940
AT3G26400		EIF4B1	eukaryotic translation initiat...		Lus10011412 [exp]	11.0	0.9111
AT4G25680			PPPDE putative thiol peptidase...		Lus10027510 [exp]	11.1	0.8664

Compare expression of checked genes

Lus10029924 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.