Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55000 299 / 4e-103 peptidoglycan-binding LysM domain-containing protein (.1.2.3) AT5G08200 49 / 1e-06 peptidoglycan-binding LysM domain-containing protein (.1) AT5G23130 46 / 2e-05 Peptidoglycan-binding LysM domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004477 [exp] 488 / 4e-177 AT1G55000 327 / 5e-114 peptidoglycan-binding LysM domain-containing protein (.1.2.3) Lus10040979 [exp] 47 / 9e-06 AT5G08200 257 / 1e-82 peptidoglycan-binding LysM domain-containing protein (.1) Lus10010198 [exp] 47 / 1e-05 AT5G08200 277 / 9e-89 peptidoglycan-binding LysM domain-containing protein (.1) Lus10013432 [exp] 47 / 1e-05 AT5G23130 248 / 2e-79 Peptidoglycan-binding LysM domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G021600 [exp] 294 / 2e-99 AT1G55000 280 / 2e-94 peptidoglycan-binding LysM domain-containing protein (.1.2.3) Potri.005G032100 [exp] 223 / 3e-74 AT1G55000 188 / 3e-61 peptidoglycan-binding LysM domain-containing protein (.1.2.3) Potri.012G036600 [exp] 48 / 2e-06 AT5G23130 275 / 6e-90 Peptidoglycan-binding LysM domain-containing protein (.1) Potri.007G071500 [exp] 44 / 6e-05 AT5G23130 292 / 1e-95 Peptidoglycan-binding LysM domain-containing protein (.1) Potri.005G092800 [exp] 43 / 0.0002 AT5G23130 284 / 1e-92 Peptidoglycan-binding LysM domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0187 [flax] [poplar] LysM PF01476 [flax] [poplar] LysM LysM domain
Representative CDS sequence Show only first row Show all	>Lus10029925 pacid=23159775 polypeptide=Lus10029925 locus=Lus10029925.g ID=Lus10029925.BGIv1.0 annot-version=v1.0 ATGAGCTGCTGTTGCGGCGAAGAATTCGCCGACGACGGCGAAAACCCACTTCCTCCCACCCTTACCCAACACCTGAACCCCTCTGCAGCCTCCGCAGACG CCCCTTTCCCGACCATTTCTCCGATGAACTCCAACTTCTCCGCCTTGACCTGCCGCGACACCCTCCGCCTGATCCTGGAGAAGCTGGCCGTTCCGGACCT TGCAAGATCCAGCTGCGTCTGCCGCGTCTGGAACTCGGTGGCCTCCGATGACGAGATTACGCGGCGAGCGTTCATGTCTCCGTGGAAACTGAAGGAGGTG ATCGGGAATCCGGCCTCCGGCGGGTTCTGGAGGGAGAACAGGATCGGGAAGTTCGCGCTCTCGCACAGGATCGCCAGAGGGGATTCCGTTGCTAGTCTCG CCGTGAAGTACTCCGTTCAGGTTATGGACATCAAAAGGCTGAACAACATGATGAGCGACCACGGCATATACTCGCGAGATAGGCTGTTGATTCCGATCAG CGATCCAGTGCTCTTGATAAATTCCACCTGCTACATAGAGTTGGATTCGTACGCGAAAAGGGAGGTAGCTGTTTTGTACCTCACTGGCCAGCCAGACAGA AAGCTCATTCCTTTATCAAACAATGGGGCTTCAGAGCGTGGCCGAAGAAGGGTCCTCGATTCGTTAAGGAGAAGCATGCAAGTCGACGATGGGACGGCTC TTTACTACCTCACTATCTCGGATGGTGACCCTCGCGCTGCACTCACCGAATTCTCGGCAGATCTGAGGTGGGAAACACAGGTTGGTTTGTCCTAA
AA sequence Show only first row Show all	>Lus10029925 pacid=23159775 polypeptide=Lus10029925 locus=Lus10029925.g ID=Lus10029925.BGIv1.0 annot-version=v1.0 MSCCCGEEFADDGENPLPPTLTQHLNPSAASADAPFPTISPMNSNFSALTCRDTLRLILEKLAVPDLARSSCVCRVWNSVASDDEITRRAFMSPWKLKEV IGNPASGGFWRENRIGKFALSHRIARGDSVASLAVKYSVQVMDIKRLNNMMSDHGIYSRDRLLIPISDPVLLINSTCYIELDSYAKREVAVLYLTGQPDR KLIPLSNNGASERGRRRVLDSLRRSMQVDDGTALYYLTISDGDPRAALTEFSADLRWETQVGLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55000			peptidoglycan-binding LysM dom...		Lus10029925 [exp]	0	1
AT4G35220			Cyclase family protein (.1)		Lus10019822 [exp]	4.2	0.8251
AT4G04770		ABCI8, ATNAP1, ...	LONG AFTER FR, ARABIDOPSIS THA...		Lus10035874 [exp]	10.4	0.8024
AT3G05010			Protein of unknown function, t...		Lus10033835 [exp]	13.5	0.8032
AT5G27280			Zim17-type zinc finger protein...		Lus10021838 [exp]	14.7	0.7581
AT1G18890		CPK10, ATCDPK1,...	calcium-dependent protein kina...		Lus10036667 [exp]	16.0	0.7659
AT4G05320		UBQ10	polyubiquitin 10 (.1.2.3.4.5.6...		Lus10018367 [exp]	17.0	0.7759
AT3G61800			unknown protein		Lus10030247 [exp]	18.0	0.7581
AT3G26600		ARO4	armadillo repeat only 4 (.1)		Lus10026695 [exp]	18.9	0.7619
AT2G24820		AtTic55, TIC55-...	translocon at the inner envelo...		Lus10026246 [exp]	20.4	0.7639
AT5G18140			Chaperone DnaJ-domain superfam...		Lus10020286 [exp]	22.8	0.7091

Compare expression of checked genes

Lus10029925 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.