Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G57790 72 / 4e-15 F-box family protein (.1) AT4G10660 66 / 6e-13 CDC68-related (.1) AT1G49360 65 / 2e-12 F-box family protein (.1) AT3G56470 61 / 5e-11 F-box family protein (.1) AT4G00893 58 / 3e-10 unknown protein AT3G18720 57 / 6e-10 F-box family protein (.1) AT4G10695 57 / 7e-10 CDC68-related (.1) AT4G12370 54 / 1e-08 unknown protein AT4G10700 53 / 1e-08 unknown protein AT4G12382 46 / 1e-06 F-box family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004476 [exp] 325 / 7e-110 AT1G57790 92 / 4e-20 F-box family protein (.1) Lus10029943 [exp] 273 / 8e-89 AT1G57790 81 / 4e-16 F-box family protein (.1) Lus10019204 [exp] 81 / 3e-18 AT1G57790 79 / 2e-16 F-box family protein (.1) Lus10024904 [exp] 64 / 5e-12 AT1G57790 97 / 2e-21 F-box family protein (.1) Lus10014208 [exp] 62 / 2e-11 AT1G57790 286 / 2e-94 F-box family protein (.1) Lus10022706 [exp] 60 / 1e-10 AT1G57790 293 / 3e-97 F-box family protein (.1) Lus10021352 [exp] 53 / 2e-08 AT1G57790 292 / 1e-96 F-box family protein (.1) Lus10017027 [exp] 52 / 8e-08 AT1G57790 286 / 6e-93 F-box family protein (.1) Lus10013738 [exp] 44 / 2e-05 AT1G57790 73 / 3e-14 F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G106800 [exp] 68 / 1e-13 AT1G57790 99 / 6e-23 F-box family protein (.1) Potri.016G079300 [exp] 59 / 2e-10 AT1G57790 313 / 5e-105 F-box family protein (.1) Potri.006G212600 [exp] 52 / 6e-08 AT1G57790 294 / 2e-97 F-box family protein (.1) Potri.002G015700 [exp] 44 / 2e-05 AT5G60060 63 / 5e-11 Protein of unknown function (DUF295) (.1) Potri.012G106750 [exp] 41 / 0.0002 AT1G57790 57 / 7e-09 F-box family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029926 pacid=23159754 polypeptide=Lus10029926 locus=Lus10029926.g ID=Lus10029926.BGIv1.0 annot-version=v1.0 ATGCAACTGCAATCCGCGACTGACATGAGCATAGTGGTGACGGAAGATCGGTGGTGTAACGTTCCAATCCACCTTCTTAGCATTATACAGTCTCTTCTGT TTGGGGCGTACCGATGCTGCTTCCGCCTTGTCTGCAAGACATGGCAATTGGCATTCTCTGCAGAAACCACCTCTAGGACGAATATGAGAGGCCACGGACT CTCGTTGCTTGTACACATAAGGAATAATGACAAAGATCGAGTTGGTTTCTTTGACCCGATAACCAACTCCAGGGTAACATTGCATGCGCCTGATTTGACA GGAGGAGGTGTGATACGTTGCTCGAAGCACGGATGGTTACTTGTAACGGAAGGAACCCACGGTACAAGTATCTTCTTCTACAATCCTTTCACCAAAGAAA GGATTATTCTTCCAAATCTGGATTCATATGACTTTGAAGGGATCACGTTCACTTCACCTCCAACCTCGTCTGACTGCATGGTTTTCGGCTCCTCAATCTT ATCACTGGATGTGACACTTGGTTATCTTTATCGAGGAAAAGATACAGGCTAA
AA sequence Show only first row Show all	>Lus10029926 pacid=23159754 polypeptide=Lus10029926 locus=Lus10029926.g ID=Lus10029926.BGIv1.0 annot-version=v1.0 MQLQSATDMSIVVTEDRWCNVPIHLLSIIQSLLFGAYRCCFRLVCKTWQLAFSAETTSRTNMRGHGLSLLVHIRNNDKDRVGFFDPITNSRVTLHAPDLT GGGVIRCSKHGWLLVTEGTHGTSIFFYNPFTKERIILPNLDSYDFEGITFTSPPTSSDCMVFGSSILSLDVTLGYLYRGKDTG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G57790			F-box family protein (.1)		Lus10029926 [exp]	0	1

Compare expression of checked genes

Lus10029926 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.