Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05345 205 / 1e-66 Chaperone DnaJ-domain superfamily protein (.1) AT2G42750 40 / 0.0007 DNAJ heat shock N-terminal domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004485 [exp] 390 / 2e-139 AT3G05345 287 / 2e-98 Chaperone DnaJ-domain superfamily protein (.1) Lus10029916 [exp] 352 / 1e-124 AT3G05345 277 / 2e-94 Chaperone DnaJ-domain superfamily protein (.1) Lus10000158 [exp] 110 / 4e-31 AT3G05345 102 / 7e-28 Chaperone DnaJ-domain superfamily protein (.1) Lus10008768 [exp] 47 / 3e-06 AT5G23240 141 / 6e-39 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10022246 [exp] 45 / 1e-05 AT5G23240 139 / 2e-37 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10020749 [exp] 41 / 0.0003 AT2G42750 455 / 1e-161 DNAJ heat shock N-terminal domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G021000 [exp] 230 / 2e-76 AT3G05345 288 / 1e-98 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G031466 [exp] 62 / 4e-13 AT3G05345 68 / 2e-15 Chaperone DnaJ-domain superfamily protein (.1) Potri.014G143400 [exp] 43 / 6e-05 AT2G42750 416 / 2e-146 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.001G347600 [exp] 42 / 0.0002 AT5G23240 149 / 2e-41 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.007G072600 [exp] 40 / 0.0009 AT5G23240 461 / 4e-160 DNAJ heat shock N-terminal domain-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029928 pacid=23159688 polypeptide=Lus10029928 locus=Lus10029928.g ID=Lus10029928.BGIv1.0 annot-version=v1.0 ATGGCGACCTTAGCTTTCTGCTATTCTTCTATCCCACCAATTCTTCCTCCGATTCACTTCTGGAATCCCACTCCCGGAAACACGATTCGATTTAATCGGA GCTCCAAATTCGCACTCCGCTGCACCGCGGGCGATGGTTCTTCTTCTTCGCCACACGCTGTTCTCGGCGTCGATCCAATCTTATCCGAATATACCGGGTC AGAGATCATCGAAAGAGAATGTATGGATCCATTTGAAAAACCAGAATGCGAAGCTTATGATTTATTCGTCAATGAAGTTTGCTGCATTGGCAAAGGGTGT CCTTATTCGTGCGTAGAACGAGCGCCACAAGCCTTCACATTTTCTCCATTCGGAACAGCCAGGGTCAAATTTCAAGGCTACGGTGGAGACTACGAAGTCC AGGTAGCAGCCGGACAATGTCCCAGGAGCTGTATTCACTGCGTTACACCGTCACAGAGGATCATTCTAGAGGAGTCATTGGACAGCATCCTCAATGCACA CTATGACTGCTCAGCAGAGTCCGAACTGCTGCATTTGCTGATCATGAAAGCAAGGTTCGAGAACAACCGGTTCCAGAAGCCGAAGAACAAGGAACCAACG ACGTCGACGCAGCATGTAGATTGGTATTGA
AA sequence Show only first row Show all	>Lus10029928 pacid=23159688 polypeptide=Lus10029928 locus=Lus10029928.g ID=Lus10029928.BGIv1.0 annot-version=v1.0 MATLAFCYSSIPPILPPIHFWNPTPGNTIRFNRSSKFALRCTAGDGSSSSPHAVLGVDPILSEYTGSEIIERECMDPFEKPECEAYDLFVNEVCCIGKGC PYSCVERAPQAFTFSPFGTARVKFQGYGGDYEVQVAAGQCPRSCIHCVTPSQRIILEESLDSILNAHYDCSAESELLHLLIMKARFENNRFQKPKNKEPT TSTQHVDWY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05345			Chaperone DnaJ-domain superfam...		Lus10029928 [exp]	0	1
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Lus10039063 [exp]	3.2	0.6462
AT5G19050			alpha/beta-Hydrolases superfam...		Lus10004426 [exp]	6.7	0.6648
AT4G35640		ATSERAT3;2	serine acetyltransferase 3;2 (...		Lus10010679 [exp]	8.5	0.6764
					Lus10043138 [exp]	45.5	0.6270
AT1G13330		AHP2	Arabidopsis Hop2 homolog (.1)		Lus10021690 [exp]	48.5	0.6112
AT4G05090			Inositol monophosphatase famil...		Lus10006739 [exp]	53.3	0.5837
AT3G44900		ATCHX4	cation/H+ exchanger 4, cation/...		Lus10037374 [exp]	63.9	0.6268
AT1G64780		ATAMT1;2	ammonium transporter 1;2 (.1)		Lus10040677 [exp]	70.6	0.6021
AT5G40230			nodulin MtN21 /EamA-like trans...		Lus10034877 [exp]	79.2	0.6024
AT3G14470			NB-ARC domain-containing disea...		Lus10008584 [exp]	83.9	0.5893

Compare expression of checked genes

Lus10029928 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.