Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27560 419 / 8e-147 Domain of unknown function (DUF1995) (.1) AT5G48790 46 / 2e-05 Domain of unknown function (DUF1995) (.1) AT5G35170 45 / 8e-05 adenylate kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029915 [exp] 633 / 0 AT5G27560 429 / 4e-151 Domain of unknown function (DUF1995) (.1) Lus10004486 [exp] 323 / 7e-110 AT5G27560 252 / 1e-82 Domain of unknown function (DUF1995) (.1) Lus10007599 [exp] 47 / 2e-05 AT5G48790 413 / 3e-141 Domain of unknown function (DUF1995) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G020800 [exp] 483 / 5e-172 AT5G27560 436 / 4e-154 Domain of unknown function (DUF1995) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09353 [flax] [poplar] DUF1995 Domain of unknown function (DUF1995)
Representative CDS sequence Show only first row Show all	>Lus10029929 pacid=23159699 polypeptide=Lus10029929 locus=Lus10029929.g ID=Lus10029929.BGIv1.0 annot-version=v1.0 ATGAACTTTTCCTTCTCGGTTTCAGCTTCCTTGTGCATTTTCTCCACTCTCCAGGAAGCGGGAACTAAATTTAGGAGCACTTTCAGGCAGGTGAAGCAGC AAAGCTTGCTCCTATCCATGGCTGCTTCAATCCCAAGCTGTTCATTTCGCCACAGCAACTTATCACCACCATCTTCATCCCACAGCACTTGCTCAACCAC AGCCACTCCATTCACCTTATCTTTCCCATTCTCATCAGCCACCAGTAGAAAAAGCTACGGCGGAGCTTCGTCATCAAGAATCTCCGCCAAGTTCGAGAAA TTCCAGGGCGAAGAGAATCCACAATCGCAAACTGAACAGGAAGAAGCAGCAGATGGTGAAGAAGGATCGGGAGTTGAGGTTCAGAAAGAAGAAGATGACA GCTGCCCTCCGTCAGATTTGGAAGGTGCTGTGAGGCAATCTGGGGAAGCAAGTGGCTTGTTTGTTTCTTCAGGAGGAATGAGAGCCATAGTGGAGCTTCT GATTCCGCAGCTTATGTTTCTGGACGATGAAGGTGCACAGGCTGAGCTGTGGGATCTCTCCAGGGTTTTCCTTGAAACCCTTATGGAACAGACTGGTTCA CAGAGGGTTAAAGCCATATATCCAGATGCTGGTGCTGCTGCAATGCTCAAGTATAGATGGAAAGAAGCAACCTTTGGATTCGCGAGCTTAGGCGACCGGG AGCCAGTTGATAGTGAAGATGAGATTGTGGTTATGGTTCTTCCAGACTATCAAATGCTGTCATCTGTTGAGAAAATTGCAGCTAGTCTCACCGACGATCC GCCAAGGCCGCTCATCATGTGGAATCCTCGCCTCATTAGTGAGGACGTTGGAGTCGGGATCAATGTTCGCAACCTTAGGCGTTACTTCCTGAGCACTTTC ACCACGGTTTATTCGATGAAACCTCTGCCTGAAGGTGCCGTCTTTAGGTGCTATCCAGGATTGTGGAAGGTGTTCTTCGACGATAAAGAGAGGCCGAACA GATACCTTCTTGCAAAGGAGTTCATTCGGCGGCCTGATTACGAAGAAATCGAGATAATATTTGGTACTGGCCAAGAAGAGTCTGAGCAAGGTCCATCATT CTTCAACAGAGCTGCTAGCCTTTTCTCTTCCATAAACAGATTCATGAGAGTCATATCAAAGTAA
AA sequence Show only first row Show all	>Lus10029929 pacid=23159699 polypeptide=Lus10029929 locus=Lus10029929.g ID=Lus10029929.BGIv1.0 annot-version=v1.0 MNFSFSVSASLCIFSTLQEAGTKFRSTFRQVKQQSLLLSMAASIPSCSFRHSNLSPPSSSHSTCSTTATPFTLSFPFSSATSRKSYGGASSSRISAKFEK FQGEENPQSQTEQEEAADGEEGSGVEVQKEEDDSCPPSDLEGAVRQSGEASGLFVSSGGMRAIVELLIPQLMFLDDEGAQAELWDLSRVFLETLMEQTGS QRVKAIYPDAGAAAMLKYRWKEATFGFASLGDREPVDSEDEIVVMVLPDYQMLSSVEKIAASLTDDPPRPLIMWNPRLISEDVGVGINVRNLRRYFLSTF TTVYSMKPLPEGAVFRCYPGLWKVFFDDKERPNRYLLAKEFIRRPDYEEIEIIFGTGQEESEQGPSFFNRAASLFSSINRFMRVISK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27560			Domain of unknown function (DU...		Lus10029929 [exp]	0	1
AT5G57960			GTP-binding protein, HflX (.1)		Lus10024287 [exp]	1.0	0.9331
AT3G56010			unknown protein		Lus10040939 [exp]	1.4	0.9186
AT1G75100		JAC1	J-domain protein required for ...		Lus10018811 [exp]	2.2	0.8860
AT1G67280			Glyoxalase/Bleomycin resistanc...		Lus10043235 [exp]	2.8	0.8893
AT4G17740			Peptidase S41 family protein (...		Lus10004402 [exp]	3.5	0.8842
AT5G59400			unknown protein		Lus10040799 [exp]	4.6	0.8826
AT2G41530		ATSFGH	ARABIDOPSIS THALIANA S-FORMYLG...		Lus10031051 [exp]	5.1	0.8748
AT5G61040			unknown protein		Lus10021155 [exp]	7.7	0.8755
AT2G02390		GST18, ATGSTZ1	GLUTATHIONE S-TRANSFERASE 18, ...		Lus10005367 [exp]	8.8	0.8588
AT1G68830		STN7	STT7 homolog STN7 (.1)		Lus10034273 [exp]	9.5	0.8720

Compare expression of checked genes

Lus10029929 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.