Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52970 516 / 2e-180 CYP76G1 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) AT2G45570 351 / 1e-115 CYP76C2 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) AT2G45560 351 / 1e-115 CYP76C1 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) AT2G45580 343 / 1e-112 CYP76C3 "cytochrome P450, family 76, subfamily C, polypeptide 3", cytochrome P450, family 76, subfamily C, polypeptide 3 (.1) AT1G33720 340 / 1e-111 CYP76C6 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) AT2G45550 339 / 6e-111 CYP76C4 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) AT3G61040 316 / 3e-102 CYP76C7 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2) AT5G07990 310 / 7e-100 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT4G22690 304 / 9e-97 CYP706A1 "cytochrome P450, family 706, subfamily A, polypeptide 1", cytochrome P450, family 706, subfamily A, polypeptide 1 (.1) AT4G22710 302 / 2e-96 CYP706A2 "cytochrome P450, family 706, subfamily A, polypeptide 2", cytochrome P450, family 706, subfamily A, polypeptide 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021135 [exp] 629 / 0 AT3G52970 634 / 0.0 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Lus10021136 [exp] 412 / 2e-139 AT3G52970 436 / 5e-149 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Lus10025749 [exp] 409 / 4e-138 AT3G52970 441 / 9e-151 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Lus10002839 [exp] 351 / 1e-115 AT3G52970 390 / 4e-131 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Lus10021137 [exp] 348 / 1e-114 AT3G52970 387 / 6e-130 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Lus10028881 [exp] 345 / 2e-113 AT2G45550 477 / 4e-165 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10008935 [exp] 343 / 2e-112 AT2G45550 476 / 5e-165 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10028852 [exp] 343 / 2e-112 AT2G45550 471 / 7e-163 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10008936 [exp] 341 / 6e-112 AT2G45550 499 / 6e-174 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G029800 [exp] 586 / 0 AT3G52970 626 / 0.0 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Potri.005G030100 [exp] 578 / 0 AT3G52970 617 / 0.0 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Potri.005G029600 [exp] 573 / 0 AT3G52970 609 / 0.0 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Potri.005G029200 [exp] 572 / 0 AT3G52970 615 / 0.0 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Potri.005G029700 [exp] 568 / 0 AT3G52970 612 / 0.0 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Potri.006G094700 [exp] 423 / 7e-144 AT3G52970 459 / 4e-158 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Potri.003G118200 [exp] 369 / 1e-122 AT2G45550 438 / 9e-150 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150100 [exp] 362 / 3e-120 AT2G45550 510 / 3e-178 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150300 [exp] 361 / 1e-119 AT2G45550 503 / 2e-175 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.001G113900 [exp] 358 / 1e-118 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10029930 pacid=23159730 polypeptide=Lus10029930 locus=Lus10029930.g ID=Lus10029930.BGIv1.0 annot-version=v1.0 ATGACCTTGGAAATTTACACCCTACCTCTTCTAGTACTCTTCCTGATATGGGCAGCGACATGGAACTGCCGGCGCCGTCACCGGCGCCACCGCCGATTTC AACAGTTGGGTGGATTACCCCCTGGCCCACATCCGCTACCAATTGTAGGCAACATATTCAATCTGAGCTGGGCTCCACACGTGTCATTAGCCCATCTATC CCGCAAACATGGGCCGATCATGACTCTGTACCTGGGCTCATTGTGTACCGTAGTAATCTCCTCGAAAGAAACGGCTCGAGCCATGCTCAAGAACTGCGAC GCCCAATTAGCCGGCCGGACAATCTATGAAGCCATGAAGGGGAACGATGGCAACGAAGGCTCCATCATCACATCGCAGTATGGCCCGCATTGGAGGATGC TTCGACGGCTGTGCACGGTCGAGTTTTTTGTCAAAAACAGTATCGATCGGACCAGACCGGTCCGTAGTCGATGCATTGATCAGATGGTCACATTCTTGGA GGAACACGGGGCTGGCGGGACCAGACCCGTGGACCTTGGTTGGTTCATGTTCGTGACAGTATTCAACCACATTGGAAACATGATGCTTTCAAGAGACTTG CTGGGCCCAAATTCGGAGATGGGGGCCCAATTCCTTTACCATGCCCAACAAGTCATGGAGTTGACCGGGAAGCCCAATGTTGCTGACTTTTTCCCTGTAC TGAGATGGCTTGATCCGCAAAGGATTAGGAGAAACACACAGTACCACGTGGACAAGGCGTATGAAATTGCGATGGTATTCATCAACGAGAGATTAACGGA GATTGAGACACGTGGTGGTCGGGATGTGGAGAAACAAGATTACTTAGATATGCTCTTGAACTTTCAGGGACAAGGAGTCAATGAGCCGTCAAAGTTGCCA ACGACTATGGTCAAAGTCATTATTTTTGAAATGTTCATAGCAGGAACAGACACAATGACGAGCACATTAGAATGGGCGATGGCTGAACTACTACTTAAGC CGGAGAAGCTACACAAAGTCCAAGCCGAGCTACAAAAGGTTATCGGCTCATGCAACAAGCTCGAAGAAACAGACTTTCAGAATCTTCCATACCTAAACGC GGTCGTAAAGGAAACCCTACGACTCCACCCACCCATTCCGTTGCTGGTCCCACACAAGGCTATGGAGCCGTGCCAAATGGTTGGCTACCACATTCCCAAG GATACGCAGATCCTCGTCAATGTCTGGGCTATCGGGAGGGACCCGGATTTATGGCCCAATCCGTTGAGCTTCGAACCTGAAAGGTTCTTGGAGTTAGAGT ACTCGGTAGACTACAAGGGACATAATTTCGAGTTCATTCCGTTTGGTTCGGGGAGGAGAATGTGCCCGGCCACACCGCTGGTATCTCAGCTCTTGCCGCT AGCATTGGGTTCGTTGTTGCATGAGTTTGATTGGGGATTGCCCGATGAGGCTGGTGCCCTAGAGATTGATATGAGCGAGAGGATGGGGATTACCCTTAAG AAAGCTGTTCCGTTGAAGGTTGTACCAATTAGAAGGAGAAATGTGAAACCTAAATAA
AA sequence Show only first row Show all	>Lus10029930 pacid=23159730 polypeptide=Lus10029930 locus=Lus10029930.g ID=Lus10029930.BGIv1.0 annot-version=v1.0 MTLEIYTLPLLVLFLIWAATWNCRRRHRRHRRFQQLGGLPPGPHPLPIVGNIFNLSWAPHVSLAHLSRKHGPIMTLYLGSLCTVVISSKETARAMLKNCD AQLAGRTIYEAMKGNDGNEGSIITSQYGPHWRMLRRLCTVEFFVKNSIDRTRPVRSRCIDQMVTFLEEHGAGGTRPVDLGWFMFVTVFNHIGNMMLSRDL LGPNSEMGAQFLYHAQQVMELTGKPNVADFFPVLRWLDPQRIRRNTQYHVDKAYEIAMVFINERLTEIETRGGRDVEKQDYLDMLLNFQGQGVNEPSKLP TTMVKVIIFEMFIAGTDTMTSTLEWAMAELLLKPEKLHKVQAELQKVIGSCNKLEETDFQNLPYLNAVVKETLRLHPPIPLLVPHKAMEPCQMVGYHIPK DTQILVNVWAIGRDPDLWPNPLSFEPERFLELEYSVDYKGHNFEFIPFGSGRRMCPATPLVSQLLPLALGSLLHEFDWGLPDEAGALEIDMSERMGITLK KAVPLKVVPIRRRNVKPK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Lus10029930 [exp]	0	1
AT4G35500			Protein kinase superfamily pro...		Lus10016690 [exp]	1.7	1.0000
AT5G14760		AO	L-aspartate oxidase (.1)		Lus10018901 [exp]	7.6	1.0000
AT1G69530		ATHEXPALPHA1.2,...	EXPANSIN 1, expansin A1 (.1.2....		Lus10003438 [exp]	7.7	1.0000
					Lus10003831 [exp]	8.2	1.0000
AT5G64790			O-Glycosyl hydrolases family 1...		Lus10005788 [exp]	9.2	1.0000
					Lus10006010 [exp]	10.1	1.0000
					Lus10010840 [exp]	10.9	1.0000
					Lus10026844 [exp]	12.0	1.0000
					Lus10023520 [exp]	12.4	1.0000
AT5G49900			Beta-glucosidase, GBA2 type fa...		Lus10023340 [exp]	12.6	1.0000

Compare expression of checked genes

Lus10029930 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.