Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54940 499 / 7e-172 PGSIP4 plant glycogenin-like starch initiation protein 4 (.1) AT1G08990 476 / 2e-162 PGSIP5 plant glycogenin-like starch initiation protein 5 (.1) AT4G33330 443 / 3e-149 PGSIP3, GUX2 glucuronic acid substitution of xylan 2, plant glycogenin-like starch initiation protein 3 (.1.2) AT3G18660 399 / 3e-131 PGSIP1, GUX1 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) AT1G77130 380 / 2e-124 PGSIP2, GUX3 glucuronic acid substitution of xylan 3, plant glycogenin-like starch initiation protein 2 (.1) AT5G18480 114 / 1e-26 PGSIP6 plant glycogenin-like starch initiation protein 6 (.1) AT4G26250 87 / 2e-18 ATGOLS6 galactinol synthase 6 (.1) AT1G60450 86 / 4e-18 ATGOLS7 galactinol synthase 7 (.1) AT1G60470 85 / 1e-17 ATGOLS4 galactinol synthase 4 (.1) AT1G09350 76 / 7e-15 ATGOLS3 galactinol synthase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031507 [exp] 644 / 0 AT1G54940 542 / 0.0 plant glycogenin-like starch initiation protein 4 (.1) Lus10021731 [exp] 432 / 1e-144 AT4G33330 803 / 0.0 glucuronic acid substitution of xylan 2, plant glycogenin-like starch initiation protein 3 (.1.2) Lus10042658 [exp] 432 / 1e-144 AT4G33330 801 / 0.0 glucuronic acid substitution of xylan 2, plant glycogenin-like starch initiation protein 3 (.1.2) Lus10020890 [exp] 394 / 7e-130 AT3G18660 828 / 0.0 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) Lus10018922 [exp] 380 / 9e-124 AT1G77130 847 / 0.0 glucuronic acid substitution of xylan 3, plant glycogenin-like starch initiation protein 2 (.1) Lus10028623 [exp] 367 / 2e-118 AT1G77130 830 / 0.0 glucuronic acid substitution of xylan 3, plant glycogenin-like starch initiation protein 2 (.1) Lus10033485 [exp] 310 / 1e-97 AT3G18660 677 / 0.0 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) Lus10027949 [exp] 104 / 2e-23 AT5G18480 635 / 0.0 plant glycogenin-like starch initiation protein 6 (.1) Lus10000817 [exp] 95 / 5e-22 AT5G18480 329 / 2e-111 plant glycogenin-like starch initiation protein 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G022900 [exp] 553 / 0 AT1G08990 561 / 0.0 plant glycogenin-like starch initiation protein 5 (.1) Potri.005G033500 [exp] 546 / 0 AT1G08990 555 / 0.0 plant glycogenin-like starch initiation protein 5 (.1) Potri.014G029900 [exp] 453 / 2e-153 AT4G33330 791 / 0.0 glucuronic acid substitution of xylan 2, plant glycogenin-like starch initiation protein 3 (.1.2) Potri.005G061600 [exp] 392 / 4e-129 AT3G18660 863 / 0.0 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) Potri.007G107200 [exp] 389 / 6e-128 AT3G18660 884 / 0.0 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) Potri.005G187900 [exp] 387 / 6e-127 AT1G77130 803 / 0.0 glucuronic acid substitution of xylan 3, plant glycogenin-like starch initiation protein 2 (.1) Potri.013G049100 [exp] 103 / 3e-23 AT5G18480 661 / 0.0 plant glycogenin-like starch initiation protein 6 (.1) Potri.008G189400 [exp] 84 / 2e-17 AT1G60470 545 / 0.0 galactinol synthase 4 (.1) Potri.010G150400 [exp] 82 / 6e-17 AT2G47180 519 / 0.0 galactinol synthase 1 (.1) Potri.008G101000 [exp] 80 / 4e-16 AT2G47180 507 / 0.0 galactinol synthase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01501 [flax] [poplar] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Lus10029932 pacid=23159689 polypeptide=Lus10029932 locus=Lus10029932.g ID=Lus10029932.BGIv1.0 annot-version=v1.0 ATGGCACACTTGAGAAGTACCCACAATCACCAATCAAAAATTGCTCAACCTTCATCCAAACCACCCCTCAATGACAACAACCATCAATATTCTTCTTCTT CTTCTTCCAACAAAAAGCTTGTTTTGCCTTCCATTTTCATCCTTTCATTGACCATTATTCTCTTGGTCCTCTCTTTCCGGTCAAAGCCCTTCTACGTTTC CATCAAACAATCCCAACGTAACGGTCTTGACCCTGATCTCGACTCGCCAGTCCATGAGAACTTGAGTGCTCAAATTCTCGACATGATGATAAAAGATCTT AGTAGGGGGACCACCGCGACCTCAACTCGTGGCACTAAATCCAAGATCAAGATCGGATTGGTCAACATGGACCCGAGCGAGAGGCGGCCCTACAAGTCCC TCGACATGGTGGAGACACTAGTTGTTGACTTCCCACGTGTCTCCCACAATCTGACGTGGAAAGATTTCTTCCCCTCTTGGGTGGACGAGTCAAGGCAACT GGACACCGACAAGTGTCCTGAGATCCCAATGCCAAGACTCGATGAGCCTCAGTATCAGGATCTAGACTTGGTGGTTGCTAGGGTTCCTTGTCTAGAGGGA GCGAATCACATCATTAATAATGGGAGTGAAGGGATCAGGGACGTGTTTCGGTTGCAAGTCAACCTGGTGGTGGCGAATCTCGTTGTGGGGAATTGGGACC GGGAGCTGTACGTTGTTTTCGTCGGGTCGTGTGGGCCCATGCTCGAGATTTTCCGGTGTGATGACATGTTGACGCATGTAGACGATTATTGGGTCTACAA GCCTGATTTGGCCAGGTTGAAACAGAAGTTGTTAATGCCGATTGGGTCATGTCAAGTGGTTCCCTATTTTGGACATAGAGGGCTAGAAGGGGGTATATCT TCTTTCGAAGACCCAAAAAAGCAAGCCTATGTAACGGTCCTCCATTCCTCGGAAGGATACGTATGTGGCGCAATCGCATTGGCTAAAAGCATCAAACTTA CCAACTCGACTCGCGACCTCGTCCTCCTCCACGACTCCTCCATCACCCCTTCCTCCCTGGCTGGCCTCCGGTTAGCCGGTTGGTCCACCCGACTCATCCA ACGCATCCGGAGCACATTTGCCGAGAAAGGCACTTACAATGAGTGGAATTATAGCAAGCTCAGGATATGGCAGCTCACTGACTACGATAAGGTGGTATTC ATCGACTCAGACCTTTTAGTCCTACAAAACATGGACGAAATCTTCACATATCCGCAGCTCTCAGCATCCTTCAACACTGCCAATAACGAGACCCTGTTCA ACTCGGGAGTCATGGTCATCGAACCCTCAGACTGCATGTTCGAGGACATCATGGCCAAGACCTCCCATGTCGCCTCTATCAATGGAGGCGACCAGGGTTT CCTGAATGAGGTGTTCACGTGGTGGCACCGCCTTCCTCGCAAGGCCAACTGGCTGAAGATGCTCGACGGGCGCGAGCCGCCAACGGAGGGTGTCTACGGG TTGCATTTTCTAGGGTCGAAGCCGTGGATGTGTTACCGGGACTACGATTGTAATTGGGATGTGGAGGGTCGAGATCTAACATTTGCAAGTGATGCCACTC ATAGGAAGTGGTGGGAAGTGTATGATGCTATGCCTAAAGGGTTGCAAAAGTATTGTGGGTTGACAAGGAAGTTGGATGATAAGATTAGGGGGAGGAGGGA GATTGCCAAAAATAACAAGTTAAGCAATGGACGGTGGAGGATTCAAGTTACTGATCCAAGAAAAGATCATTTAATTGGTTGA
AA sequence Show only first row Show all	>Lus10029932 pacid=23159689 polypeptide=Lus10029932 locus=Lus10029932.g ID=Lus10029932.BGIv1.0 annot-version=v1.0 MAHLRSTHNHQSKIAQPSSKPPLNDNNHQYSSSSSSNKKLVLPSIFILSLTIILLVLSFRSKPFYVSIKQSQRNGLDPDLDSPVHENLSAQILDMMIKDL SRGTTATSTRGTKSKIKIGLVNMDPSERRPYKSLDMVETLVVDFPRVSHNLTWKDFFPSWVDESRQLDTDKCPEIPMPRLDEPQYQDLDLVVARVPCLEG ANHIINNGSEGIRDVFRLQVNLVVANLVVGNWDRELYVVFVGSCGPMLEIFRCDDMLTHVDDYWVYKPDLARLKQKLLMPIGSCQVVPYFGHRGLEGGIS SFEDPKKQAYVTVLHSSEGYVCGAIALAKSIKLTNSTRDLVLLHDSSITPSSLAGLRLAGWSTRLIQRIRSTFAEKGTYNEWNYSKLRIWQLTDYDKVVF IDSDLLVLQNMDEIFTYPQLSASFNTANNETLFNSGVMVIEPSDCMFEDIMAKTSHVASINGGDQGFLNEVFTWWHRLPRKANWLKMLDGREPPTEGVYG LHFLGSKPWMCYRDYDCNWDVEGRDLTFASDATHRKWWEVYDAMPKGLQKYCGLTRKLDDKIRGRREIAKNNKLSNGRWRIQVTDPRKDHLIG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54940		PGSIP4	plant glycogenin-like starch i...		Lus10029932 [exp]	0	1

Compare expression of checked genes

Lus10029932 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.