Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05327 174 / 8e-55 Cyclin family protein (.1) AT2G44740 166 / 4e-52 CYCP4;1 cyclin p4;1 (.1) AT3G63120 165 / 3e-51 CYCP1;1 cyclin p1;1 (.1) AT5G07450 164 / 4e-51 CYCP4;3 cyclin p4;3 (.1) AT5G61650 155 / 2e-47 CYCP4;2 CYCLIN P4;2 (.1) AT3G21870 144 / 4e-43 CYCP2;1 cyclin p2;1 (.1) AT2G45080 143 / 1e-42 CYCP3;1 cyclin p3;1 (.1) AT3G60550 134 / 3e-39 CYCP3;2 cyclin p3;2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004475 [exp] 390 / 3e-140 AT3G05327 171 / 1e-53 Cyclin family protein (.1) Lus10022038 [exp] 187 / 5e-60 AT3G63120 197 / 8e-64 cyclin p1;1 (.1) Lus10042582 [exp] 184 / 1e-58 AT3G63120 191 / 2e-61 cyclin p1;1 (.1) Lus10039697 [exp] 157 / 4e-48 AT3G21870 236 / 3e-79 cyclin p2;1 (.1) Lus10027148 [exp] 158 / 7e-48 AT3G21870 233 / 6e-77 cyclin p2;1 (.1) Lus10043003 [exp] 155 / 5e-47 AT2G44740 227 / 2e-75 cyclin p4;1 (.1) Lus10032505 [exp] 154 / 7e-47 AT2G44740 228 / 7e-76 cyclin p4;1 (.1) Lus10042873 [exp] 135 / 1e-39 AT3G60550 300 / 8e-104 cyclin p3;2 (.1) Lus10028174 [exp] 124 / 1e-35 AT2G45080 249 / 1e-84 cyclin p3;1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G023000 [exp] 210 / 3e-69 AT3G05327 194 / 4e-63 Cyclin family protein (.1) Potri.005G033600 [exp] 201 / 2e-65 AT3G05327 184 / 5e-59 Cyclin family protein (.1) Potri.005G209800 [exp] 199 / 1e-64 AT3G63120 223 / 7e-74 cyclin p1;1 (.1) Potri.002G052800 [exp] 195 / 7e-63 AT3G63120 219 / 1e-71 cyclin p1;1 (.1) Potri.012G114600 [exp] 175 / 2e-55 AT2G44740 277 / 2e-95 cyclin p4;1 (.1) Potri.014G050400 [exp] 174 / 7e-55 AT2G44740 285 / 8e-99 cyclin p4;1 (.1) Potri.015G112140 [exp] 166 / 5e-52 AT2G44740 274 / 1e-94 cyclin p4;1 (.1) Potri.007G121500 [exp] 163 / 3e-50 AT3G21870 228 / 5e-76 cyclin p2;1 (.1) Potri.002G143400 [exp] 143 / 1e-42 AT2G45080 324 / 1e-113 cyclin p3;1 (.1) Potri.014G066400 [exp] 140 / 2e-41 AT3G60550 343 / 3e-121 cyclin p3;2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [flax] [poplar] Cyclin PF08613 [flax] [poplar] Cyclin Cyclin
Representative CDS sequence Show only first row Show all	>Lus10029933 pacid=23159749 polypeptide=Lus10029933 locus=Lus10029933.g ID=Lus10029933.BGIv1.0 annot-version=v1.0 ATGGGAACCCGAATCACAGGTTCTACCTACGAGTCGAGGGCCAATCAATCCAGTACCGAACTCCCTCGACTCATCTCGCTCCTCGCGTCTTCTCTGGAAA AGGCCGTTCAGAGGAACGACAAGAAGAAGACATCATCAGATGTGAACAACACAGTCTTCCACGGATCAAAACCGCCAGCCTTGAGCATCAGGCAGTATCT CGAACGGGTTTTCAAGTACGCGAAATGCAGCACTTCGTGCTTCGTCATGGCTCACATCTATCTCGAGAGGTTATGCCAGAGGAGCCGCAGCTGCCTGACT CCCTTGAACATCCACCGGCTCCTCATCACGAGCGTCATGGTTGCAGCCAAGTTCCTAGACGACGAGTGTTACAACAACGAGTATTATGCGAGAATCGGAG GAGTGAGTACAGAGGAGATGAACAGGATGGAGATGAAGTTCTTGTTTAGCTTGGATTTCAGGCTCAATGTCACTGTGGAGAGCTACATAAGTTACTGCTC TCAACTGGAAAGGGAAGGCCGTGGAAGAGATCATTACCCGGCAATGATCATTCCGACGAGGTTGGAGAGCAGAGTCCTGTCGCAGGCACCGCAGGCTTCA CGTAGGCTGGTATCGACAGTTGGAAGATAA
AA sequence Show only first row Show all	>Lus10029933 pacid=23159749 polypeptide=Lus10029933 locus=Lus10029933.g ID=Lus10029933.BGIv1.0 annot-version=v1.0 MGTRITGSTYESRANQSSTELPRLISLLASSLEKAVQRNDKKKTSSDVNNTVFHGSKPPALSIRQYLERVFKYAKCSTSCFVMAHIYLERLCQRSRSCLT PLNIHRLLITSVMVAAKFLDDECYNNEYYARIGGVSTEEMNRMEMKFLFSLDFRLNVTVESYISYCSQLEREGRGRDHYPAMIIPTRLESRVLSQAPQAS RRLVSTVGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05327			Cyclin family protein (.1)		Lus10029933 [exp]	0	1
AT5G59030		COPT1	copper transporter 1 (.1)		Lus10017204 [exp]	4.4	0.8926
AT2G42820		HVA22F	HVA22-like protein F (.1)		Lus10010944 [exp]	8.7	0.8901
AT1G13920			Remorin family protein (.1)		Lus10037111 [exp]	11.1	0.8887
AT3G05327			Cyclin family protein (.1)		Lus10004475 [exp]	11.8	0.8170
AT5G19875			unknown protein		Lus10034527 [exp]	14.1	0.8670
AT2G42820		HVA22F	HVA22-like protein F (.1)		Lus10031386 [exp]	14.6	0.8802
AT3G18260			Reticulon family protein (.1)		Lus10032451 [exp]	20.6	0.8755
AT1G55020		ATLOX1, LOX1	ARABIDOPSIS LIPOXYGENASE 1, li...		Lus10038242 [exp]	26.3	0.8361
AT3G55740		ATPROT2, ProT2	proline transporter 2 (.1.2)		Lus10040238 [exp]	28.0	0.8414
AT5G18970			AWPM-19-like family protein (....		Lus10021949 [exp]	28.4	0.8659

Compare expression of checked genes

Lus10029933 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.