Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27490 445 / 9e-160 Integral membrane Yip1 family protein (.1) AT3G05280 402 / 9e-143 Integral membrane Yip1 family protein (.1) AT2G39805 180 / 2e-55 Integral membrane Yip1 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004473 [exp] 531 / 0 AT5G27490 474 / 4e-171 Integral membrane Yip1 family protein (.1) Lus10015189 [exp] 490 / 2e-177 AT5G27490 464 / 4e-167 Integral membrane Yip1 family protein (.1) Lus10031511 [exp] 488 / 2e-176 AT5G27490 462 / 3e-166 Integral membrane Yip1 family protein (.1) Lus10004695 [exp] 160 / 6e-48 AT2G39805 324 / 2e-112 Integral membrane Yip1 family protein (.1.2) Lus10001020 [exp] 150 / 3e-43 AT2G39805 322 / 1e-110 Integral membrane Yip1 family protein (.1.2) Lus10030159 [exp] 114 / 5e-30 AT2G39805 256 / 6e-85 Integral membrane Yip1 family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G033900 [exp] 459 / 5e-165 AT5G27490 468 / 2e-168 Integral membrane Yip1 family protein (.1) Potri.013G023400 [exp] 432 / 2e-154 AT5G27490 423 / 6e-151 Integral membrane Yip1 family protein (.1) Potri.008G060300 [exp] 182 / 2e-56 AT2G39805 335 / 1e-116 Integral membrane Yip1 family protein (.1.2) Potri.010G198300 [exp] 179 / 5e-55 AT2G39805 321 / 9e-111 Integral membrane Yip1 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0112 [flax] [poplar] Yip1 PF04893 [flax] [poplar] Yip1 Yip1 domain
Representative CDS sequence Show only first row Show all	>Lus10029935 pacid=23159809 polypeptide=Lus10029935 locus=Lus10029935.g ID=Lus10029935.BGIv1.0 annot-version=v1.0 ATGATGTCCGGAAACTACACCCACATTGACAACCAGAAAGTCTCTGGATCTGTACCCGCGGTTACAGATCAGGCCCACGTTCCCGTTCAGTTCGCAGAGT CAAATCTGCAAACTTTTCCTCCTTCTGGCGCTCAGGGGAAGATCAGTGGTGGATCCAGGCCGCCCCGTGATTCTGACGATTCGTTTTCAAAACCAGTCAA TGGTACCAATGAACCGCAGCAGCAAGGCGGTTGGCTTCGGGCATTCTCGATTGCTGCATACAAGCCATACTTTGACGTTGACACTGTAGATGTTCTAGAG AGAATCAAAGATGCACTCCTCCCATTTAATGGATCCTTTAACGAGAAAACAGCAAACAACCCAGACTTGTACGGACCCTTCTGGATATGCACCACTTTAA TCTTCGTAGCAGCATCGATCGGAACTATCGTTACATACATAGCGCACAAGCTTCACAATAAAGAATGGAACTACGACATAAACGTCGTAACCTGGTCTGC CGGATTGTTCTACGGATACGTAACTATAGTCCCTCTCGTTCTATACATGATCCTCAAGTACTTCTCAGCACCATCGGGTCTTGTACAGCTATTCTGTCTG TACGGTTACTCCCTGTTCATCTTCATCCCAACTCTGTGTCTCTCAGTTGTTCCCTTGGAGATCTTCAGATGGGTAGTTGCAGGTGTGGCGGGATTCATGT CGGCATCGTTTGTCGCACTGAACCTCCGAGCTCATATAATGTCGGCAGGCGAAAGATGGTTCTTGATCGTCGCTGGGATCTTTGTACTGCAGCTAGCGCT GTCGGTTGTGTTGAAGATGTATCTATTTACTATTACTGTATAA
AA sequence Show only first row Show all	>Lus10029935 pacid=23159809 polypeptide=Lus10029935 locus=Lus10029935.g ID=Lus10029935.BGIv1.0 annot-version=v1.0 MMSGNYTHIDNQKVSGSVPAVTDQAHVPVQFAESNLQTFPPSGAQGKISGGSRPPRDSDDSFSKPVNGTNEPQQQGGWLRAFSIAAYKPYFDVDTVDVLE RIKDALLPFNGSFNEKTANNPDLYGPFWICTTLIFVAASIGTIVTYIAHKLHNKEWNYDINVVTWSAGLFYGYVTIVPLVLYMILKYFSAPSGLVQLFCL YGYSLFIFIPTLCLSVVPLEIFRWVVAGVAGFMSASFVALNLRAHIMSAGERWFLIVAGIFVLQLALSVVLKMYLFTITV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27490			Integral membrane Yip1 family ...		Lus10029935 [exp]	0	1
AT2G04780		FLA7	FASCICLIN-like arabinoogalacta...		Lus10001733 [exp]	1.4	0.9284
AT1G75780		TUB1	tubulin beta-1 chain (.1)		Lus10021094 [exp]	3.0	0.9156
AT1G71970			unknown protein		Lus10009418 [exp]	3.9	0.8926
AT5G04060			S-adenosyl-L-methionine-depend...		Lus10038973 [exp]	4.2	0.9201
AT3G24350		ATSYP32, SYP32	syntaxin of plants 32 (.1.2)		Lus10017741 [exp]	5.8	0.8907
AT2G45470		AGP8, FLA8	FASCICLIN-like arabinogalactan...		Lus10009235 [exp]	11.0	0.9028
AT3G08900		RGP3	reversibly glycosylated polype...		Lus10000646 [exp]	11.2	0.8855
AT1G72480			Lung seven transmembrane recep...		Lus10013162 [exp]	11.7	0.9060
AT1G72480			Lung seven transmembrane recep...		Lus10008125 [exp]	11.8	0.9048
AT1G71070			Core-2/I-branching beta-1,6-N-...		Lus10010887 [exp]	12.2	0.9042

Compare expression of checked genes

Lus10029935 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.